RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 GCFC2P16383 781 aaKnown RBP17.9■□□□□ 0.46
SHMT2-232ENST00000557487 CDK8P49336 464 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 COASYQ13057 564 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 PLCB4Q15147 1175 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 ASPRV1Q53RT3 343 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 FAM26FQ5R3K3 315 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 TRIM59Q8IWR1 403 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 CCDC65Q8IXS2 484 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 LSM14BQ9BX40 385 aaKnown RBP17.9■□□□□ 0.46
SHMT2-232ENST00000557487 SMARCAL1Q9NZC9 954 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.9■□□□□ 0.46
SHMT2-232ENST00000557487 TAF1P21675 1872 aa17.89■□□□□ 0.46
SHMT2-232ENST00000557487 MDH1P40925 334 aaKnown RBP17.89■□□□□ 0.45
SHMT2-232ENST00000557487 SETQ01105 290 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-232ENST00000557487 ASIC2Q16515 512 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 PTGISQ16647 500 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 C15orf52Q6ZUT6 534 aaKnown RBP17.89■□□□□ 0.45
SHMT2-232ENST00000557487 SMIM5Q71RC9 77 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 TGFBRAP1Q8WUH2 860 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 CASKIN2Q8WXE0 1202 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 IFT81Q8WYA0 676 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 PIK3R5Q8WYR1 880 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 ARHGEF1Q92888 912 aaKnown RBP17.89■□□□□ 0.45
SHMT2-232ENST00000557487 DNAJC19Q96DA6 116 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 MS4A14Q96JA4 679 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 RNPC3Q96LT9 517 aaKnown RBP17.89■□□□□ 0.45
SHMT2-232ENST00000557487 PIGSQ96S52 555 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 EHD4Q9H223 541 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 EHD2Q9NZN4 543 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 ATF5Q9Y2D1 282 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-232ENST00000557487 ATAD5Q96QE3 1844 aa17.89■□□□□ 0.45
SHMT2-232ENST00000557487 KRT14P02533 472 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 KLRC1P26715 233 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 POLR2FP61218 127 aaKnown RBP17.88■□□□□ 0.45
SHMT2-232ENST00000557487 KLHL30Q0D2K2 578 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 KIAA0753Q2KHM9 967 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 EDRF1Q3B7T1 1238 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 ACTRT1Q8TDG2 376 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 KRT12Q99456 494 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 NLRC4Q9NPP4 1024 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 PANK4Q9NVE7 773 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 GEMIN8Q9NWZ8 242 aaKnown RBP17.88■□□□□ 0.45
SHMT2-232ENST00000557487 PLIN4Q96Q06 1357 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 BIRC3Q13489 604 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 MTMR3Q13615 1198 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 RPS6KA1Q15418 735 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 SKIDA1Q1XH10 827 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 USP17L2Q6R6M4 530 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 RUFY4Q6ZNE9 571 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 TBC1D5Q92609 795 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 HINFPQ9BQA5 517 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 TMBIM4Q9HC24 238 aa17.88■□□□□ 0.45
SHMT2-232ENST00000557487 CCDC188H7C350 402 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 FAM107AO95990 144 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 FAM153BP0C7A2 387 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 HNRNPH1P31943 449 aaKnown RBP17.87■□□□□ 0.45
SHMT2-232ENST00000557487 USP11P51784 963 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 FAM153CQ494X1 144 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 NAA35Q5VZE5 725 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 ZNF804AQ7Z570 1209 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 CCDC91Q7Z6B0 441 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 SLC44A5Q8NCS7 719 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 KAT2BQ92831 832 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 FAM153AQ9UHL3 310 aa17.87■□□□□ 0.45
SHMT2-232ENST00000557487 BHMG1C9JSJ3 638 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-232ENST00000557487 SLC37A4O43826 429 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 FTCDO95954 541 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 IRX3P78415 501 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-232ENST00000557487 ITGB3BPQ13352 177 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-232ENST00000557487 SLC4A8Q2Y0W8 1093 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 TPTE2Q6XPS3 522 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 SH2D3CQ8N5H7 860 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 ZNF473Q8WTR7 871 aaKnown RBP17.86■□□□□ 0.45
SHMT2-232ENST00000557487 SCFD2Q8WU76 684 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 LMBR1Q8WVP7 490 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 CABS1Q96KC9 395 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 SETDB2Q96T68 719 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 RTFDC1Q9BY42 306 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-232ENST00000557487 A1CFQ9NQ94 594 aaKnown RBP17.86■□□□□ 0.45
SHMT2-232ENST00000557487 MTMR7Q9Y216 660 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 SAMM50Q9Y512 469 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 GCOM1H8Y6P7 765 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-232ENST00000557487 MYZAPP0CAP1 466 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 EPS15P42566 896 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 ATP1A2P50993 1020 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 MRPS25P82663 173 aaKnown RBP17.86■□□□□ 0.45
SHMT2-232ENST00000557487 DDR1Q08345 913 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 RAPGEF1Q13905 1077 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 TBC1D9BQ66K14 1250 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 KCTD16Q68DU8 428 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 ARMC9Q7Z3E5 817 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 RPAINQ86UA6 219 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 SLF2Q8IX21 1173 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 GLT8D2Q9H1C3 349 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 GANQ9H2C0 597 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 TMEM260Q9NX78 707 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 SWAP70Q9UH65 585 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 C10orf71Q711Q0 1435 aa17.86■□□□□ 0.45
SHMT2-232ENST00000557487 DDX60LQ5H9U9 1706 aaKnown RBP17.85■□□□□ 0.45
SHMT2-232ENST00000557487 PITPNM2Q9BZ72 1349 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms