RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 NCCRP1Q6ZVX7 275 aaPredicted RBP6.84□□□□□ -1.31
TDP1-215ENST00000556498 CATSPER4Q7RTX7 472 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 SYT2Q8N9I0 419 aaPredicted RBP6.84□□□□□ -1.31
TDP1-215ENST00000556498 SPERTQ8NA61 448 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 GIMAP8Q8ND71 665 aaPredicted RBP6.84□□□□□ -1.31
TDP1-215ENST00000556498 CCDC112Q8NEF3 446 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 NEK11Q8NG66 645 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 GDAP1Q8TB36 358 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 GTF3C6Q969F1 213 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 PLD4Q96BZ4 506 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 SNX27Q96L92 541 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 HHIPQ96QV1 700 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 POP1Q99575 1024 aaKnown RBP6.84□□□□□ -1.31
TDP1-215ENST00000556498 PARD6BQ9BYG5 372 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 BHLHE41Q9C0J9 482 aaPredicted RBP6.84□□□□□ -1.31
TDP1-215ENST00000556498 ZWILCHQ9H900 591 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 SH3GLB2Q9NR46 395 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 PAPOLBQ9NRJ5 636 aaKnown RBP6.84□□□□□ -1.31
TDP1-215ENST00000556498 TYW1Q9NV66 732 aaKnown RBP6.84□□□□□ -1.31
TDP1-215ENST00000556498 FRRS1LQ9P0K9 344 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 FAM8A1Q9UBU6 413 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 PPP1R9AQ9ULJ8 1098 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 MAPK8IP1Q9UQF2 711 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 STARD13Q9Y3M8 1113 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 C2CD2Q9Y426 696 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 PCDHB2Q9Y5E7 798 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 PCDHGC5Q9Y5F6 944 aa6.84□□□□□ -1.31
TDP1-215ENST00000556498 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.84□□□□□ -1.31
TDP1-215ENST00000556498 CARMIL1Q5VZK9 1371 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 ARPC4-TTLL3A0A0A6YYG9 625 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 CLRN2A0PK11 232 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 OIP5O43482 229 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 DNAJC6O75061 913 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 SMNDC1O75940 238 aaKnown RBP eCLIP6.83□□□□□ -1.32
TDP1-215ENST00000556498 RECKO95980 971 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 TUBB4AP04350 444 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 PDGFRBP09619 1106 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 SKIV2L2P42285 1042 aaKnown RBP6.83□□□□□ -1.32
TDP1-215ENST00000556498 AMPHP49418 695 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 OXCT1P55809 520 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 LRRC74AQ0VAA2 488 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 TRAP1Q12931 704 aaKnown RBP6.83□□□□□ -1.32
TDP1-215ENST00000556498 SAFBQ15424 915 aaKnown RBP eCLIP6.83□□□□□ -1.32
TDP1-215ENST00000556498 ALFQ53S48 1182 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 TNNI3KQ59H18 835 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 ZC3H12BQ5HYM0 836 aaKnown RBP6.83□□□□□ -1.32
TDP1-215ENST00000556498 WDR45BQ5MNZ6 344 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 CEP85LQ5SZL2 805 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 C10orf62Q5T681 223 aaPredicted RBP6.83□□□□□ -1.32
TDP1-215ENST00000556498 LCE2AQ5TA79 106 aaPredicted RBP6.83□□□□□ -1.32
TDP1-215ENST00000556498 PSAPL1Q6NUJ1 521 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 ABRAXAS1Q6UWZ7 409 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 INTS8Q75QN2 995 aaKnown RBP6.83□□□□□ -1.32
TDP1-215ENST00000556498 CENPQQ7L2Z9 268 aaPredicted RBP6.83□□□□□ -1.32
TDP1-215ENST00000556498 GRAMD2AQ8IUY3 354 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 DYDC1Q8WWB3 177 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 EDARADDQ8WWZ3 215 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 RSAD2Q8WXG1 361 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 TTC9Q92623 222 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 COG3Q96JB2 828 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 TBATAQ96M53 351 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 SERINC2Q96SA4 455 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 CCT7Q99832 543 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 LPIN3Q9BQK8 851 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 UBXN6Q9BZV1 441 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.83□□□□□ -1.32
TDP1-215ENST00000556498 SMG9Q9H0W8 520 aaKnown RBP6.83□□□□□ -1.32
TDP1-215ENST00000556498 VCPKMTQ9H867 229 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 TTC12Q9H892 705 aaPredicted RBP6.83□□□□□ -1.32
TDP1-215ENST00000556498 PLEKHA5Q9HAU0 1116 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 ABCB6Q9NP58 842 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 GIT1Q9Y2X7 761 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 ZNF711Q9Y462 761 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 SNX5Q9Y5X3 404 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 TACC3Q9Y6A5 838 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 MIA2Q96PC5 1412 aa6.83□□□□□ -1.32
TDP1-215ENST00000556498 CCNB3Q8WWL7 1395 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 LAMC3Q9Y6N6 1575 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 ELP1O95163 1332 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 TMEM247A6NEH6 219 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 NDC80O14777 642 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 DNAJC8O75937 253 aaPredicted RBP6.82□□□□□ -1.32
TDP1-215ENST00000556498 CAVIN2O95810 425 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 KRT18P05783 430 aaKnown RBP6.82□□□□□ -1.32
TDP1-215ENST00000556498 CAP2P40123 477 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 ETV3P41162 512 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 GRIA4P48058 902 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 NLRP5P59047 1200 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 BPIFB3P59826 476 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 POLR2FP61218 127 aaKnown RBP6.82□□□□□ -1.32
TDP1-215ENST00000556498 PDE1CQ14123 709 aaPredicted RBP6.82□□□□□ -1.32
TDP1-215ENST00000556498 C8orf74Q6P047 294 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 CYP26C1Q6V0L0 522 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 C20orf204Q6ZNR8 217 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 RASGRP2Q7LDG7 609 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 MAATS1Q7Z4T9 603 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 SPARTQ8N0X7 666 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 USP38Q8NB14 1042 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 AFAP1L1Q8TED9 768 aa6.82□□□□□ -1.32
TDP1-215ENST00000556498 SGCDQ92629 289 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms