RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 RSRC2Q7L4I2 434 aaKnown RBP16.27■□□□□ 0.2
CUX1-215ENST00000556210 LCMT1Q9UIC8 334 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 JRKLQ9Y4A0 524 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 GCOM1H8Y6P7 765 aaPredicted RBP16.27■□□□□ 0.19
CUX1-215ENST00000556210 K7ENM7 598 aa16.27■□□□□ 0.19
CUX1-215ENST00000556210 POLR2MP0CAP2 368 aa16.27■□□□□ 0.19
CUX1-215ENST00000556210 NMT1P30419 496 aaKnown RBP16.27■□□□□ 0.19
CUX1-215ENST00000556210 GNGT1P63211 74 aa16.27■□□□□ 0.19
CUX1-215ENST00000556210 TMEM139Q8IV31 216 aa16.27■□□□□ 0.19
CUX1-215ENST00000556210 PPM1KQ8N3J5 372 aa16.27■□□□□ 0.19
CUX1-215ENST00000556210 KBTBD4Q9NVX7 518 aa16.27■□□□□ 0.19
CUX1-215ENST00000556210 RSPH10B2B2RC85 870 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 ECE2O60344 883 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 FLOT1O75955 427 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 RSPH10BP0C881 870 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 SLC9A1P19634 815 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 BEND6Q5SZJ8 279 aaPredicted RBP16.26■□□□□ 0.19
CUX1-215ENST00000556210 RC3H1Q5TC82 1133 aaKnown RBP16.26■□□□□ 0.19
CUX1-215ENST00000556210 KIAA0895Q8NCT3 520 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 ZNF577Q9BSK1 485 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 CAPN6Q9Y6Q1 641 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 LRRC37A3O60309 1634 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 CNTNAP4Q9C0A0 1308 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 KRIT1O00522 736 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 EIF2AK2P19525 551 aaKnown RBP16.26■□□□□ 0.19
CUX1-215ENST00000556210 KCNB1Q14721 858 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 NPY5RQ15761 445 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 IFI16Q16666 785 aaKnown RBP16.26■□□□□ 0.19
CUX1-215ENST00000556210 SH3RF1Q7Z6J0 888 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 JDP2Q8WYK2 163 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 SWAP70Q9UH65 585 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 CCPG1Q9ULG6 757 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 DDTLA6NHG4 134 aaPredicted RBP16.26■□□□□ 0.19
CUX1-215ENST00000556210 SPOPO43791 374 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 TCP1P17987 556 aaKnown RBP16.26■□□□□ 0.19
CUX1-215ENST00000556210 BIRC3Q13489 604 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 ZC2HC1CQ53FD0 456 aaPredicted RBP16.26■□□□□ 0.19
CUX1-215ENST00000556210 CEP85LQ5SZL2 805 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 FAM102BQ5T8I3 360 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 GJB7Q6PEY0 223 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 GBP6Q6ZN66 633 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 SLFN12Q8IYM2 578 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 SELENOSQ9BQE4 189 aa16.26■□□□□ 0.19
CUX1-215ENST00000556210 PPANQ9NQ55 473 aaKnown RBP16.26■□□□□ 0.19
CUX1-215ENST00000556210 GGCXP38435 758 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 MIER3Q7Z3K6 550 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 IFT20Q8IY31 132 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 CCDC170Q8IYT3 715 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 RETREG2Q8NC44 543 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 KDM3BQ7LBC6 1761 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 FAM237AA0A1B0GTK4 181 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 EPHB6O15197 1021 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 ZNF746Q6NUN9 644 aaPredicted RBP16.25■□□□□ 0.19
CUX1-215ENST00000556210 FAM186BQ8IYM0 893 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 HOOK2Q96ED9 719 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 DUSP9Q99956 384 aaKnown RBP16.25■□□□□ 0.19
CUX1-215ENST00000556210 RIC8AQ9NPQ8 531 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 NDUFB10O96000 172 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 MYL1P05976 194 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 ECE1P42892 770 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 MAGEA9P43362 315 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 STAT2P52630 851 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 PPP4CP60510 307 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 PSMC6P62333 389 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 ALKBH5Q6P6C2 394 aaKnown RBP16.25■□□□□ 0.19
CUX1-215ENST00000556210 MICALCLQ6ZW33 695 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 GIMAP7Q8NHV1 300 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 MAGEF1Q9HAY2 307 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 FBXO28Q9NVF7 368 aa16.25■□□□□ 0.19
CUX1-215ENST00000556210 GOLGB1Q14789 3259 aaKnown RBP16.25■□□□□ 0.19
CUX1-215ENST00000556210 LMO7Q8WWI1 1683 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 H2AFZP0C0S5 128 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 NPR1P16066 1061 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 LRRC63Q05C16 580 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 H2AFVQ71UI9 128 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 CCDC50Q8IVM0 306 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 GUF1Q8N442 669 aaKnown RBP16.24■□□□□ 0.19
CUX1-215ENST00000556210 DYDC2Q96IM9 177 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 EFCC1Q9HA90 598 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 ZNF277Q9NRM2 450 aaPredicted RBP16.24■□□□□ 0.19
CUX1-215ENST00000556210 HERVK_113P62684 666 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 TTLL12Q14166 644 aaPredicted RBP16.24■□□□□ 0.19
CUX1-215ENST00000556210 CAPS2Q9BXY5 557 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 ZBTB39O15060 712 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 PPFIA4O75335 1185 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 CC2D2BQ6DHV5 1058 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 OSBPL9Q96SU4 736 aa16.24■□□□□ 0.19
CUX1-215ENST00000556210 KCPQ6ZWJ8 1503 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 RCCD1A6NED2 376 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 AFPP02771 609 aaKnown RBP16.23■□□□□ 0.19
CUX1-215ENST00000556210 MYBP10242 640 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 C7orf25Q9BPX7 421 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 NEFHP12036 1026 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 DDR1Q08345 913 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 XKR9Q5GH70 373 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 ELMO3Q96BJ8 720 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 PRPHP41219 470 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 ZNF211Q13398 564 aaPredicted RBP16.23■□□□□ 0.19
CUX1-215ENST00000556210 IRF2BP1Q8IU81 584 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 TNFRSF25Q93038 417 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms