RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 PDGFDQ9GZP0 370 aaPredicted RBP6.57□□□□□ -1.36
SCFD1-217ENST00000555953 KLC2Q9H0B6 622 aa6.57□□□□□ -1.36
SCFD1-217ENST00000555953 IQCA1LA6NCM1 817 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 KNG1P01042 644 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 GPR85P60893 370 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 SPIRE1Q08AE8 756 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 SMAD2Q15796 467 aaKnown RBP6.56□□□□□ -1.36
SCFD1-217ENST00000555953 SLFN13Q68D06 897 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 NSMFQ6X4W1 530 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 ZNF428Q96B54 188 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 WWC2-AS2Q96NR7 200 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 GMLQ99445 158 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 ZFYVE21Q9BQ24 234 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 ZFP69BQ9UJL9 534 aa6.56□□□□□ -1.36
SCFD1-217ENST00000555953 FSHBP01225 129 aa6.55□□□□□ -1.36
SCFD1-217ENST00000555953 GLRBP48167 497 aa6.55□□□□□ -1.36
SCFD1-217ENST00000555953 CD276Q5ZPR3 534 aa6.55□□□□□ -1.36
SCFD1-217ENST00000555953 STYK1Q6J9G0 422 aa6.55□□□□□ -1.36
SCFD1-217ENST00000555953 ZNF585AQ6P3V2 769 aa6.55□□□□□ -1.36
SCFD1-217ENST00000555953 Q6ZUG5 572 aa6.55□□□□□ -1.36
SCFD1-217ENST00000555953 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.55□□□□□ -1.36
SCFD1-217ENST00000555953 SLC43A3Q8NBI5 491 aa6.55□□□□□ -1.36
SCFD1-217ENST00000555953 SLC16A11Q8NCK7 471 aa6.55□□□□□ -1.36
SCFD1-217ENST00000555953 ST13P5Q8NFI4 369 aaPredicted RBP6.55□□□□□ -1.36
SCFD1-217ENST00000555953 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.55□□□□□ -1.36
SCFD1-217ENST00000555953 DSEQ9UL01 958 aa6.55□□□□□ -1.36
SCFD1-217ENST00000555953 ASXL2Q76L83 1435 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 PATE3B3GLJ2 98 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 FBXO21O94952 628 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 CNOT4O95628 575 aaKnown RBP6.54□□□□□ -1.36
SCFD1-217ENST00000555953 SOD2P04179 222 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 CHGBP05060 677 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 C6P13671 934 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 PFKPQ01813 784 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 RALYLQ86SE5 291 aaKnown RBP6.54□□□□□ -1.36
SCFD1-217ENST00000555953 PALM2Q8IXS6 379 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 IFNL3Q8IZI9 196 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 Q8N1X5 172 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 STPG3Q8N7X2 389 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 IPPKQ9H8X2 491 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 KCND1Q9NSA2 647 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 ARHGAP20Q9P2F6 1191 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 NUB1Q9Y5A7 615 aa6.54□□□□□ -1.36
SCFD1-217ENST00000555953 TRAV20A0A0B4J274 112 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 ZNF839A8K0R7 811 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 ACOT7O00154 380 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 IL18BPO95998 194 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 ENO2P09104 434 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-217ENST00000555953 TACR2P21452 398 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 CSF2RBP32927 897 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 EPHA5P54756 1037 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 IFRD2Q12894 506 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-217ENST00000555953 RAB33AQ14088 237 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 R3HDM1Q15032 1099 aaKnown RBP6.53□□□□□ -1.36
SCFD1-217ENST00000555953 KCTD1Q719H9 257 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 GPR155Q7Z3F1 870 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 AJUBAQ96IF1 538 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 CD244Q9BZW8 370 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 SCAND2PQ9GZW5 306 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-217ENST00000555953 DEF6Q9H4E7 631 aa6.53□□□□□ -1.36
SCFD1-217ENST00000555953 FAM47E-STBD1D6RA91 191 aa6.52□□□□□ -1.37
SCFD1-217ENST00000555953 SELENOPP49908 381 aa6.52□□□□□ -1.37
SCFD1-217ENST00000555953 CRIP3Q6Q6R5 217 aa6.52□□□□□ -1.37
SCFD1-217ENST00000555953 LRRC47Q8N1G4 583 aaKnown RBP6.52□□□□□ -1.37
SCFD1-217ENST00000555953 SH3RF2Q8TEC5 729 aa6.52□□□□□ -1.37
SCFD1-217ENST00000555953 CDK5RAP1Q96SZ6 601 aaKnown RBP6.52□□□□□ -1.37
SCFD1-217ENST00000555953 SRRDQ9UH36 339 aa6.52□□□□□ -1.37
SCFD1-217ENST00000555953 SLC4A7Q9Y6M7 1214 aa6.52□□□□□ -1.37
SCFD1-217ENST00000555953 TCRBV5S4A2TA0A5A2 114 aa6.51□□□□□ -1.37
SCFD1-217ENST00000555953 ZNF623O75123 536 aa6.51□□□□□ -1.37
SCFD1-217ENST00000555953 Q8TCH9 128 aa6.51□□□□□ -1.37
SCFD1-217ENST00000555953 GNRHR2Q96P88 292 aa6.51□□□□□ -1.37
SCFD1-217ENST00000555953 TACO1Q9BSH4 297 aaKnown RBP6.51□□□□□ -1.37
SCFD1-217ENST00000555953 ALG1Q9BT22 464 aa6.51□□□□□ -1.37
SCFD1-217ENST00000555953 TCAF1Q9Y4C2 921 aa6.51□□□□□ -1.37
SCFD1-217ENST00000555953 TRAF6Q9Y4K3 522 aa6.51□□□□□ -1.37
SCFD1-217ENST00000555953 ZNF747Q9BV97 191 aa6.5□□□□□ -1.37
SCFD1-217ENST00000555953 KRTAP17-1Q9BYP8 105 aa6.5□□□□□ -1.37
SCFD1-217ENST00000555953 KATNBL1Q9H079 304 aa6.5□□□□□ -1.37
SCFD1-217ENST00000555953 SEC61A2Q9H9S3 476 aa6.5□□□□□ -1.37
SCFD1-217ENST00000555953 SLC39A2Q9NP94 309 aa6.5□□□□□ -1.37
SCFD1-217ENST00000555953 PTPN22Q9Y2R2 807 aa6.5□□□□□ -1.37
SCFD1-217ENST00000555953 H0Y858 1186 aa6.49□□□□□ -1.37
SCFD1-217ENST00000555953 ZNF888P0CJ79 500 aaPredicted RBP6.49□□□□□ -1.37
SCFD1-217ENST00000555953 SPDYAQ5MJ70 313 aa6.49□□□□□ -1.37
SCFD1-217ENST00000555953 SPATC1Q76KD6 591 aa6.49□□□□□ -1.37
SCFD1-217ENST00000555953 REXO1L1PQ8IX06 675 aa6.49□□□□□ -1.37
SCFD1-217ENST00000555953 LRRC37BQ96QE4 947 aa6.49□□□□□ -1.37
SCFD1-217ENST00000555953 LMF1Q96S06 567 aa6.49□□□□□ -1.37
SCFD1-217ENST00000555953 SPATA9Q9BWV2 254 aa6.49□□□□□ -1.37
SCFD1-217ENST00000555953 VPS11Q9H270 941 aa6.49□□□□□ -1.37
SCFD1-217ENST00000555953 MUSKO15146 869 aa6.48□□□□□ -1.37
SCFD1-217ENST00000555953 FOXS1O43638 330 aa6.48□□□□□ -1.37
SCFD1-217ENST00000555953 ADCY3O60266 1144 aa6.48□□□□□ -1.37
SCFD1-217ENST00000555953 DBPQ10586 325 aaPredicted RBP6.48□□□□□ -1.37
SCFD1-217ENST00000555953 TCTN3Q6NUS6 607 aa6.48□□□□□ -1.37
SCFD1-217ENST00000555953 IFNL2Q8IZJ0 200 aa6.48□□□□□ -1.37
SCFD1-217ENST00000555953 ZNF669Q96BR6 464 aaPredicted RBP6.48□□□□□ -1.37
SCFD1-217ENST00000555953 SORCS2Q96PQ0 1159 aa6.48□□□□□ -1.37
SCFD1-217ENST00000555953 TRIM55Q9BYV6 548 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms