RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 USP17L24Q0WX57 530 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 USP17L6PQ6QN14 398 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 KSR1Q8IVT5 923 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 P2RX5Q93086 422 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 SPATA33Q96N06 139 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 RILPQ96NA2 401 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 UBE2TQ9NPD8 197 aaPredicted RBP8.92□□□□□ -0.98
SYNE2-220ENST00000555612 EMILIN3Q9NT22 766 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 STK17AQ9UEE5 414 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 GDAQ9Y2T3 454 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 NMT2O60551 498 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 MXI1P50539 228 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 YWHAGP61981 247 aaKnown RBP eCLIP8.92□□□□□ -0.98
SYNE2-220ENST00000555612 RCSD1Q6JBY9 416 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 GDAP1L1Q96MZ0 367 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 RPAP3Q9H6T3 665 aaPredicted RBP8.92□□□□□ -0.98
SYNE2-220ENST00000555612 ACAD9Q9H845 621 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 NOL3O60936 208 aaKnown RBP8.92□□□□□ -0.98
SYNE2-220ENST00000555612 LMNB1P20700 586 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 STAT3P40763 770 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 PHKA2P46019 1235 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 KRT71Q3SY84 523 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 DNAJC24Q6P3W2 148 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 RABEP2Q9H5N1 569 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 LMBRD1Q9NUN5 540 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 DDX41Q9UJV9 622 aaKnown RBP8.92□□□□□ -0.98
SYNE2-220ENST00000555612 REREQ9P2R6 1566 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 PLEKHG2Q9H7P9 1386 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 ATF2P15336 505 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 IFNAR1P17181 557 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 PLCG1P19174 1290 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 MAPK4P31152 587 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 SATB1Q01826 763 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 KIF23Q02241 960 aaPredicted RBP8.92□□□□□ -0.98
SYNE2-220ENST00000555612 AP3B2Q13367 1082 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 SURF1Q15526 300 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 RUFY4Q6ZNE9 571 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 RPUSD2Q8IZ73 545 aaKnown RBP8.92□□□□□ -0.98
SYNE2-220ENST00000555612 IFT122Q9HBG6 1241 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 ZNF302Q9NR11 478 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 SAR1BQ9Y6B6 198 aa8.92□□□□□ -0.98
SYNE2-220ENST00000555612 SGK1O00141 431 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 WDR46O15213 610 aaKnown RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 MTMR3Q13615 1198 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 NEDD9Q14511 834 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 CLEC17AQ6ZS10 378 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 CEP95Q96GE4 821 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 OSBPL3Q9H4L5 887 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 TOPORSQ9NS56 1045 aaPredicted RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 ANGPTL3Q9Y5C1 460 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 PCDHA5Q9Y5H7 936 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 BZW2Q9Y6E2 419 aaKnown RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 ZNF853P0CG23 659 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 MTMR2Q13614 643 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 RNF219Q5W0B1 726 aaPredicted RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 CROCCP2Q86T23 111 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 RHPN2Q8IUC4 686 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 UHMK1Q8TAS1 419 aaKnown RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 AIFM3Q96NN9 605 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 ZBTB12Q9Y330 459 aaPredicted RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 HYOU1Q9Y4L1 999 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 RGS12O14924 1447 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 CDHR2Q9BYE9 1310 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 BUB1BO60566 1050 aaPredicted RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 RASSF7Q02833 373 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 PRAMEF18Q5VWM3 479 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 CCDC62Q6P9F0 684 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 GCNT4Q9P109 453 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 TRPM1Q7Z4N2 1603 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 PPP6R2O75170 966 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 KRT1P04264 644 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 LLGL1Q15334 1064 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 MICALL1Q8N3F8 863 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 TTC30BQ8N4P2 665 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 AFAP1L1Q8TED9 768 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 HDAC11Q96DB2 347 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 ERO1AQ96HE7 468 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 GSDMAQ96QA5 445 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 HUNKP57058 714 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 MAPK6Q16659 721 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 ANGEL2Q5VTE6 544 aaKnown RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 SLFN12LQ6IEE8 588 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 TRIM11Q96F44 468 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 LBHD1Q9BQE6 289 aaPredicted RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 CALN1Q9BXU9 219 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 PTPN22Q9Y2R2 807 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 PCDHB6Q9Y5E3 794 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 GFPT2O94808 682 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 ZNF18P17022 549 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 RBBP5Q15291 538 aaKnown RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 ZNF568Q3ZCX4 644 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 VSIG1Q86XK7 387 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 DNAAF3Q8N9W5 541 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 SPDYE1Q8NFV5 336 aaPredicted RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 DHTKD1Q96HY7 919 aaPredicted RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 DCP1AQ9NPI6 582 aaPredicted RBP8.91□□□□□ -0.98
SYNE2-220ENST00000555612 GGA3Q9NZ52 723 aa8.91□□□□□ -0.98
SYNE2-220ENST00000555612 F5H6K3 240 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 CLGNO14967 610 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 TSPY1Q01534 308 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms