RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 GALNT17Q6IS24 598 aa15.61■□□□□ 0.09
SHMT2-219ENST00000555563 DHX38Q92620 1227 aaKnown RBP15.61■□□□□ 0.09
SHMT2-219ENST00000555563 SCLYQ96I15 445 aa15.61■□□□□ 0.09
SHMT2-219ENST00000555563 RNPC3Q96LT9 517 aaKnown RBP15.61■□□□□ 0.09
SHMT2-219ENST00000555563 PHF20Q9BVI0 1012 aa15.61■□□□□ 0.09
SHMT2-219ENST00000555563 UPF2Q9HAU5 1272 aaKnown RBP15.61■□□□□ 0.09
SHMT2-219ENST00000555563 SLC9A2Q9UBY0 812 aa15.61■□□□□ 0.09
SHMT2-219ENST00000555563 DDX39AO00148 427 aaKnown RBP15.6■□□□□ 0.09
SHMT2-219ENST00000555563 PITPNM1O00562 1244 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 EDIL3O43854 480 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 ACRP10323 421 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 HOXC8P31273 242 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 CIITAP33076 1130 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 ZNF200P98182 395 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-219ENST00000555563 PRR16Q569H4 304 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 C16orf59Q7L2K0 433 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 TBCKQ8TEA7 893 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 SEPT1Q8WYJ6 367 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 WASF1Q92558 559 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 LENG9Q96B70 501 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 UIMC1Q96RL1 719 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.6■□□□□ 0.092e-16■■□□□ 13.4
SHMT2-219ENST00000555563 EMSYQ7Z589 1322 aa15.6■□□□□ 0.09
SHMT2-219ENST00000555563 C17orf102A2RUQ5 167 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 IPO5O00410 1097 aaKnown RBP15.59■□□□□ 0.09
SHMT2-219ENST00000555563 CCNE2O96020 404 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 XBP1P17861 261 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 ACTR2P61160 394 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 BFSP2Q13515 415 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 RABEP1Q15276 862 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 CCDC83Q8IWF9 413 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 DEFB123Q8N688 67 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 WNT8BQ93098 351 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 PCYT2Q99447 389 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 IL23AQ9NPF7 189 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 SCN5AQ14524 2016 aa15.59■□□□□ 0.09
SHMT2-219ENST00000555563 DHX15O43143 795 aaKnown RBP15.58■□□□□ 0.08
SHMT2-219ENST00000555563 LGR5O75473 907 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 MARK3P27448 753 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 FOSBP53539 338 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 RBL2Q08999 1139 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 PTK7Q13308 1070 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 NONOQ15233 471 aaKnown RBP eCLIP15.58■□□□□ 0.08
SHMT2-219ENST00000555563 TMEM240Q5SV17 173 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 PSRC1Q6PGN9 363 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-219ENST00000555563 ZNF365Q70YC5 407 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 KRT25Q7Z3Z0 450 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 CCDC155Q8N6L0 562 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 CAGE1Q8TC20 777 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 GLG1Q92896 1179 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 VWCEQ96DN2 955 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 ZNF577Q9BSK1 485 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 RNPEPQ9H4A4 650 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 ERAP1Q9NZ08 941 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 GTF3C3Q9Y5Q9 886 aa15.58■□□□□ 0.08
SHMT2-219ENST00000555563 TRIP12Q14669 1992 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-219ENST00000555563 TDP2O95551 362 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 IQCF3P0C7M6 154 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 USP11P51784 963 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 INF2Q27J81 1249 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 TRIM71Q2Q1W2 868 aaKnown RBP15.57■□□□□ 0.08
SHMT2-219ENST00000555563 SERINC5Q86VE9 423 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 RETREG2Q8NC44 543 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 OXER1Q8TDS5 423 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 AFAP1L1Q8TED9 768 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 LMBR1Q8WVP7 490 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 ATP6V0A1Q93050 837 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 TBC1D32Q96NH3 1257 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 SMARCAD1Q9H4L7 1026 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 SETD4Q9NVD3 440 aa15.57■□□□□ 0.08
SHMT2-219ENST00000555563 CCDC194A0A1B0GVG4 234 aa15.56■□□□□ 0.08
SHMT2-219ENST00000555563 TREHO43280 583 aa15.56■□□□□ 0.08
SHMT2-219ENST00000555563 CKBP12277 381 aa15.56■□□□□ 0.08
SHMT2-219ENST00000555563 PPFIA1Q13136 1202 aa15.56■□□□□ 0.08
SHMT2-219ENST00000555563 LRRC8DQ7L1W4 858 aa15.56■□□□□ 0.08
SHMT2-219ENST00000555563 DEFB128Q7Z7B8 93 aa15.56■□□□□ 0.08
SHMT2-219ENST00000555563 ZSCAN31Q96LW9 406 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-219ENST00000555563 AZI2Q9H6S1 392 aa15.56■□□□□ 0.08
SHMT2-219ENST00000555563 SH2B1Q9NRF2 756 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-219ENST00000555563 TBC1D22BQ9NU19 505 aa15.56■□□□□ 0.08
SHMT2-219ENST00000555563 NRCAMQ92823 1304 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 MSH4O15457 936 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 ATG7O95352 703 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 SELPP16109 830 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 RFC2P35250 354 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 KRT2P35908 639 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 ADAM17P78536 824 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 NR5A1Q13285 461 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 RASIP1Q5U651 963 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 MOXD1Q6UVY6 613 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 ABHD15Q6UXT9 468 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 PIK3AP1Q6ZUJ8 805 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 Q7L0L9 218 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 OTOP2Q7RTS6 562 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 CCDC60Q8IWA6 550 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-219ENST00000555563 RPUSD2Q8IZ73 545 aaKnown RBP15.55■□□□□ 0.08
SHMT2-219ENST00000555563 HERVK_113Q902F9 699 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 MBOAT7Q96N66 472 aa15.55■□□□□ 0.08
SHMT2-219ENST00000555563 LLPHQ9BRT6 129 aaKnown RBP15.55■□□□□ 0.08
SHMT2-219ENST00000555563 STXBP5LQ9Y2K9 1186 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms