RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 LRRC23Q53EV4 343 aaPredicted RBP17.12■□□□□ 0.33
SYNE3-203ENST00000554873 ARL6IP4Q66PJ3 421 aaKnown RBP17.12■□□□□ 0.33
SYNE3-203ENST00000554873 ERICH1Q86X53 443 aa17.12■□□□□ 0.33
SYNE3-203ENST00000554873 CNOT10Q9H9A5 744 aaKnown RBP17.12■□□□□ 0.33
SYNE3-203ENST00000554873 COL1A1P02452 1464 aaPredicted RBP17.12■□□□□ 0.33
SYNE3-203ENST00000554873 GPR75-ASB3A0A0A6YYF3 556 aa17.12■□□□□ 0.33
SYNE3-203ENST00000554873 ASAP2O43150 1006 aa17.12■□□□□ 0.33
SYNE3-203ENST00000554873 FAM163BP0C2L3 166 aa17.12■□□□□ 0.33
SYNE3-203ENST00000554873 PCP11498 1178 aaKnown RBP17.12■□□□□ 0.33
SYNE3-203ENST00000554873 STAT6P42226 847 aa17.12■□□□□ 0.33
SYNE3-203ENST00000554873 ALDH5A1P51649 535 aaPredicted RBP17.12■□□□□ 0.33
SYNE3-203ENST00000554873 CDK17Q00537 523 aa17.12■□□□□ 0.33
SYNE3-203ENST00000554873 KIAA0753Q2KHM9 967 aa17.12■□□□□ 0.33
SYNE3-203ENST00000554873 PPP1R15BQ5SWA1 713 aa17.12■□□□□ 0.33
SYNE3-203ENST00000554873 CENPTQ96BT3 561 aa17.12■□□□□ 0.33
SYNE3-203ENST00000554873 ASB3Q9Y575 518 aa17.12■□□□□ 0.33
SYNE3-203ENST00000554873 NTSR2O95665 410 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 VIMP08670 466 aaKnown RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 ALDH3A1P30838 453 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 MRPS35P82673 323 aaKnown RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 PARP10Q53GL7 1025 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 NAALADL2Q58DX5 795 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 ERMARDQ5T6L9 678 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 NUGGCQ68CJ6 796 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 SPICE1Q8N0Z3 855 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 EIF1ADQ8N9N8 165 aaKnown RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 LRRC45Q96CN5 670 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 NIP7Q9Y221 180 aaKnown RBP eCLIP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 CICQ96RK0 1608 aaPredicted RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 MYH13Q9UKX3 1938 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 CAMTA2O94983 1202 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 CTNNA1P35221 906 aaKnown RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 ZBED6P86452 979 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 CACNA1SQ13698 1873 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 TRPM8Q7Z2W7 1104 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 ANKRD23Q86SG2 305 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 RETREG2Q8NC44 543 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 OR2W6PQ8NHA6 318 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 BICD1Q96G01 975 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 XPO6Q96QU8 1125 aaKnown RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 FAM129AQ9BZQ8 928 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 SUDS3Q9H7L9 328 aaPredicted RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 AGPAT5Q9NUQ2 364 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 WDR35Q9P2L0 1181 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 NOVA2Q9UNW9 492 aaKnown RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 AFF2P51816 1311 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 ZNF263O14978 683 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 KCNJ2P63252 427 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 FAM133BQ5BKY9 247 aaKnown RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 ATL2Q8NHH9 583 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 TBC1D5Q92609 795 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 CCDC42Q96M95 316 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 IFIH1Q9BYX4 1025 aaKnown RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 TTYH3Q9C0H2 523 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 DISC1Q9NRI5 854 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 TSKSQ9UJT2 592 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 G3BP2Q9UN86 482 aaKnown RBP17.11■□□□□ 0.33
SYNE3-203ENST00000554873 C2CD2Q9Y426 696 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 COL4A1P02462 1669 aa17.11■□□□□ 0.33
SYNE3-203ENST00000554873 PDS5AQ29RF7 1337 aaKnown RBP17.1■□□□□ 0.33
SYNE3-203ENST00000554873 FAM205AQ6ZU69 1335 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 LBRQ14739 615 aaKnown RBP17.1■□□□□ 0.33
SYNE3-203ENST00000554873 PIGWQ7Z7B1 504 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 DTNBP1Q96EV8 351 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 TRIM4Q9C037 500 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 AGAP1Q9UPQ3 857 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 PP2D1A8MPX8 630 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 UPP2O95045 317 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 TRIM21P19474 475 aaKnown RBP17.1■□□□□ 0.33
SYNE3-203ENST00000554873 BLIDQ8IZY5 108 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 RASGRP4Q8TDF6 673 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 PRCCQ92733 491 aaPredicted RBP17.1■□□□□ 0.33
SYNE3-203ENST00000554873 MS4A14Q96JA4 679 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 TLR10Q9BXR5 811 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 CCDC87Q9NVE4 849 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 PCDHA13Q9Y5I0 950 aa17.1■□□□□ 0.33
SYNE3-203ENST00000554873 NCK2O43639 380 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 KLRC4O43908 158 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 EEF1GP26641 437 aaKnown RBP17.09■□□□□ 0.33
SYNE3-203ENST00000554873 DNM2P50570 870 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 MAGOHP61326 146 aaKnown RBP17.09■□□□□ 0.33
SYNE3-203ENST00000554873 UAP1Q16222 522 aaPredicted RBP17.09■□□□□ 0.33
SYNE3-203ENST00000554873 SGSM1Q2NKQ1 1148 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 LMNTD2Q8IXW0 634 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 MAGOHBQ96A72 148 aaKnown RBP17.09■□□□□ 0.33
SYNE3-203ENST00000554873 ZNF317Q96PQ6 595 aaPredicted RBP17.09■□□□□ 0.33
SYNE3-203ENST00000554873 XIRP1Q702N8 1843 aaKnown RBP17.09■□□□□ 0.33
SYNE3-203ENST00000554873 ABCA3Q99758 1704 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 SPDYE5A6NIY4 337 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 PDLIM1O00151 329 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 ZSCAN9O15535 394 aaPredicted RBP17.09■□□□□ 0.33
SYNE3-203ENST00000554873 CYP2D6P10635 497 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 CRKLP46109 303 aaKnown RBP17.09■□□□□ 0.33
SYNE3-203ENST00000554873 USP4Q13107 963 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 ANO7Q6IWH7 933 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 KRT26Q7Z3Y9 468 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 GPKOWQ92917 476 aaPredicted RBP eCLIP17.09■□□□□ 0.33
SYNE3-203ENST00000554873 FAM84BQ96KN1 310 aaPredicted RBP17.09■□□□□ 0.33
SYNE3-203ENST00000554873 PLEKHG4BQ96PX9 1271 aa17.09■□□□□ 0.33
SYNE3-203ENST00000554873 KRT12Q99456 494 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms