RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 ZSCAN22P10073 491 aaPredicted RBP6.91□□□□□ -1.3
VPS33B-203ENST00000554264 ZNF76P36508 570 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 EIF4A3P38919 411 aaKnown RBP6.91□□□□□ -1.3
VPS33B-203ENST00000554264 FKBP1BP68106 108 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 RPL6Q02878 288 aaKnown RBP6.91□□□□□ -1.3
VPS33B-203ENST00000554264 PWP1Q13610 501 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 SLBPQ14493 270 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS33B-203ENST00000554264 ANKRD1Q15327 319 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 NKG7Q16617 165 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 TBC1D10BQ4KMP7 808 aaPredicted RBP6.91□□□□□ -1.3
VPS33B-203ENST00000554264 ZMYM1Q5SVZ6 1142 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 ZNF765Q7L2R6 523 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 METTL16Q86W50 562 aaKnown RBP6.91□□□□□ -1.3
VPS33B-203ENST00000554264 ERC1Q8IUD2 1116 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS33B-203ENST00000554264 PDCL2Q8N4E4 241 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 ZGPATQ8N5A5 531 aaKnown RBP6.91□□□□□ -1.3
VPS33B-203ENST00000554264 SSH3Q8TE77 659 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 GATAD2BQ8WXI9 593 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 EYA3Q99504 573 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 THUMPD2Q9BTF0 503 aaKnown RBP6.91□□□□□ -1.3
VPS33B-203ENST00000554264 CCDC94Q9BW85 323 aaPredicted RBP6.91□□□□□ -1.3
VPS33B-203ENST00000554264 DBNDD1Q9H9R9 158 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 TSPYL4Q9UJ04 414 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 HDAC9Q9UKV0 1011 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 RNF112Q9ULX5 631 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 LIMCH1Q9UPQ0 1083 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 CORINQ9Y5Q5 1042 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 ELP1O95163 1332 aa6.91□□□□□ -1.3
VPS33B-203ENST00000554264 KDM3BQ7LBC6 1761 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 ADM5C9JUS6 153 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 CCDC192P0DO97 292 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 GRK4P32298 578 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 RACK1P63244 317 aaKnown RBP6.9□□□□□ -1.3
VPS33B-203ENST00000554264 FAM193AP78312 1265 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 ZNF394Q53GI3 561 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 VPS53Q5VIR6 699 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 OGFOD3Q6PK18 319 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 DLK2Q6UY11 383 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.9□□□□□ -1.3
VPS33B-203ENST00000554264 ZNF296Q8WUU4 475 aaPredicted RBP6.9□□□□□ -1.3
VPS33B-203ENST00000554264 KIF1BPQ96EK5 621 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 GTPBP4Q9BZE4 634 aaKnown RBP6.9□□□□□ -1.3
VPS33B-203ENST00000554264 SSU72Q9NP77 194 aaKnown RBP6.9□□□□□ -1.3
VPS33B-203ENST00000554264 TRMT112Q9UI30 125 aaKnown RBP6.9□□□□□ -1.3
VPS33B-203ENST00000554264 POLR3KQ9Y2Y1 108 aaPredicted RBP6.9□□□□□ -1.3
VPS33B-203ENST00000554264 SH3TC1Q8TE82 1336 aa6.9□□□□□ -1.3
VPS33B-203ENST00000554264 SGSM2O43147 1006 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 STX6O43752 255 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 ECE2O60344 883 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 NEMFO60524 1076 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 GLRX3O76003 335 aaKnown RBP6.89□□□□□ -1.31
VPS33B-203ENST00000554264 UBTFL1P0CB47 393 aaPredicted RBP6.89□□□□□ -1.31
VPS33B-203ENST00000554264 ZKSCAN1P17029 563 aaPredicted RBP6.89□□□□□ -1.31
VPS33B-203ENST00000554264 PSMA5P28066 241 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 TCIRG1Q13488 830 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 PKP1Q13835 747 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 NOLC1Q14978 699 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS33B-203ENST00000554264 DNTTIP2Q5QJE6 756 aaKnown RBP6.89□□□□□ -1.31
VPS33B-203ENST00000554264 TAF3Q5VWG9 929 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 LRP10Q7Z4F1 713 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 NLRP10Q86W26 655 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 RASAL3Q86YV0 1011 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 ZNF507Q8TCN5 953 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 CDCA5Q96FF9 252 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 FEZ1Q99689 392 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 DUSP23Q9BVJ7 150 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 ALDH8A1Q9H2A2 487 aaPredicted RBP6.89□□□□□ -1.31
VPS33B-203ENST00000554264 PICK1Q9NRD5 415 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 METTL5Q9NRN9 209 aaKnown RBP6.89□□□□□ -1.31
VPS33B-203ENST00000554264 GGA3Q9NZ52 723 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 SMC3Q9UQE7 1217 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 KIF3AQ9Y496 699 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 PCDHGB7Q9Y5F8 929 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS33B-203ENST00000554264 U3KQE9 123 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 RFX7Q2KHR2 1363 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 DUOX1Q9NRD9 1551 aa6.89□□□□□ -1.31
VPS33B-203ENST00000554264 TCHHQ07283 1943 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 RTL9Q8NET4 1388 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 SCAMP3O14828 347 aaKnown RBP6.88□□□□□ -1.31
VPS33B-203ENST00000554264 TLR3O15455 904 aaKnown RBP6.88□□□□□ -1.31
VPS33B-203ENST00000554264 KIF20AO95235 890 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 TUBB4AP04350 444 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 VIL1P09327 827 aaKnown RBP6.88□□□□□ -1.31
VPS33B-203ENST00000554264 FAM87AP0C7U9 286 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 EIF2S2P20042 333 aaKnown RBP6.88□□□□□ -1.31
VPS33B-203ENST00000554264 CRKP46108 304 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 HDLBPQ00341 1268 aaKnown RBP6.88□□□□□ -1.31
VPS33B-203ENST00000554264 SNAP47Q5SQN1 464 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 FBXO46Q6PJ61 603 aaPredicted RBP6.88□□□□□ -1.31
VPS33B-203ENST00000554264 FAM214BQ7L5A3 538 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 CREBRFQ8IUR6 639 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 AGBL3Q8NEM8 1001 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 RNF34Q969K3 372 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 SCAND2PQ9GZW5 306 aaPredicted RBP6.88□□□□□ -1.31
VPS33B-203ENST00000554264 DDX19AQ9NUU7 478 aaKnown RBP6.88□□□□□ -1.31
VPS33B-203ENST00000554264 TJP2Q9UDY2 1190 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 POLLQ9UGP5 575 aa6.88□□□□□ -1.31
VPS33B-203ENST00000554264 TNRC18O15417 2968 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms