RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 LRRC41Q15345 812 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 IL17AQ16552 155 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 BRDTQ58F21 947 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-209ENST00000553949 GNASQ5JWF2 1037 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 ARL6IP4Q66PJ3 421 aaKnown RBP13.8□□□□□ -0.2
SHMT2-209ENST00000553949 DTHD1Q6ZMT9 781 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 RNF180Q86T96 592 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 SMAP1Q8IYB5 467 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-209ENST00000553949 LINC00301Q8NCQ3 95 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 ARRDC4Q8NCT1 418 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 SEPT1Q8WYJ6 367 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 MORC2Q9Y6X9 1032 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-209ENST00000553949 ELP1O95163 1332 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 WDR64B1ANS9 1081 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 ZEB2O60315 1214 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 PPFIA4O75335 1185 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 ATG7O95352 703 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 TFRCP02786 760 aaKnown RBP13.79□□□□□ -0.2
SHMT2-209ENST00000553949 HOXD8P13378 290 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-209ENST00000553949 NCLP19338 710 aaKnown RBP13.79□□□□□ -0.2
SHMT2-209ENST00000553949 CST5P28325 142 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-209ENST00000553949 MARCKSP29966 332 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-209ENST00000553949 SFNP31947 248 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 TCF7P36402 384 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-209ENST00000553949 FXR2P51116 673 aaKnown RBP eCLIP13.79□□□□□ -0.2
SHMT2-209ENST00000553949 DGKDQ16760 1214 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 TMEM266Q2M3C6 531 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 CCSAPQ6IQ19 270 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-209ENST00000553949 MIS18BP1Q6P0N0 1132 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 TNPO1Q92973 898 aaKnown RBP13.79□□□□□ -0.2
SHMT2-209ENST00000553949 ABHD8Q96I13 439 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 DISC1Q9NRI5 854 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 SAMM50Q9Y512 469 aa13.79□□□□□ -0.2
SHMT2-209ENST00000553949 VWA3AA6NCI4 1184 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 POTEMA6NI47 508 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 EML1O00423 815 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 DNM1LO00429 736 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 SPTLC2O15270 562 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 KPNA6O60684 536 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 SUPT20HL2P0C7V6 817 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 JAK3P52333 1124 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 KCNA10Q16322 511 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 NCAPH2Q6IBW4 605 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 ABHD15Q6UXT9 468 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 MIER3Q7Z3K6 550 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 PCSK9Q8NBP7 692 aaKnown RBP13.78□□□□□ -0.2
SHMT2-209ENST00000553949 RDM1Q8NG50 284 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 FERMT2Q96AC1 680 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 FBXO2Q9UK22 296 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-209ENST00000553949 RCOR1Q9UKL0 485 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 PCDHA10Q9Y5I2 948 aa13.78□□□□□ -0.2
SHMT2-209ENST00000553949 IGKV6D-21A0A0A0MT36 114 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 PPP6R2O75170 966 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 LGALS2P05162 132 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 PSAPP07602 524 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 MYL3P08590 195 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 CAPN2P17655 700 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 GRIN1Q05586 938 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 PDIA5Q14554 519 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 EPHA7Q15375 998 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 UTP14CQ5TAP6 766 aaKnown RBP13.77□□□□□ -0.21
SHMT2-209ENST00000553949 TNS4Q8IZW8 715 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 IGSF22Q8N9C0 903 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 KRI1Q8N9T8 703 aaKnown RBP13.77□□□□□ -0.21
SHMT2-209ENST00000553949 KCNG4Q8TDN1 519 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 LEO1Q8WVC0 666 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-209ENST00000553949 TSEN34Q9BSV6 310 aaKnown RBP13.77□□□□□ -0.21
SHMT2-209ENST00000553949 RAB34Q9BZG1 259 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 SCAND2PQ9GZW5 306 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-209ENST00000553949 LRWD1Q9UFC0 647 aa13.77□□□□□ -0.21
SHMT2-209ENST00000553949 SRPRBQ9Y5M8 271 aaKnown RBP13.77□□□□□ -0.21
SHMT2-209ENST00000553949 EMSYQ7Z589 1322 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 MOXD2PA6NHM9 499 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 KBTBD13C9JR72 458 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 BACH1O14867 736 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 LGR5O75473 907 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 ASGR1P07306 291 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 ZNF286BP0CG31 522 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 MNX1P50219 401 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-209ENST00000553949 ACLYP53396 1101 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 PURAQ00577 322 aaKnown RBP13.76□□□□□ -0.21
SHMT2-209ENST00000553949 SWSAP1Q6NVH7 229 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 CXCL17Q6UXB2 119 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 TRIM50Q86XT4 487 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 CCDC60Q8IWA6 550 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-209ENST00000553949 ANKLE1Q8NAG6 615 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 GLG1Q92896 1179 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 SPATA32Q96LK8 384 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 PCYT2Q99447 389 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 C16orf70Q9BSU1 422 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 MTG1Q9BT17 334 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-209ENST00000553949 AZI2Q9H6S1 392 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 ZNF302Q9NR11 478 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 GABBR1Q9UBS5 961 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 PHF24Q9UPV7 400 aa13.76□□□□□ -0.21
SHMT2-209ENST00000553949 PP2D1A8MPX8 630 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 F2P00734 622 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 LONP1P36776 959 aaKnown RBP13.75□□□□□ -0.21
SHMT2-209ENST00000553949 ME1P48163 572 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 STAT5BP51692 787 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms