RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 TRIM50Q86XT4 487 aa14.6□□□□□ -0.07
LINC00643-202ENST00000553426 MYOCDQ8IZQ8 938 aa14.6□□□□□ -0.07
LINC00643-202ENST00000553426 ZNF713Q8N859 430 aaPredicted RBP14.6□□□□□ -0.07
LINC00643-202ENST00000553426 DBF4BQ8NFT6 615 aa14.6□□□□□ -0.07
LINC00643-202ENST00000553426 TNPO1Q92973 898 aaKnown RBP14.6□□□□□ -0.07
LINC00643-202ENST00000553426 ERAP1Q9NZ08 941 aa14.6□□□□□ -0.07
LINC00643-202ENST00000553426 PKD2L1Q9P0L9 805 aa14.6□□□□□ -0.07
LINC00643-202ENST00000553426 NAP1L2Q9ULW6 460 aaPredicted RBP14.6□□□□□ -0.07
LINC00643-202ENST00000553426 INSL6Q9Y581 213 aa14.6□□□□□ -0.07
LINC00643-202ENST00000553426 MTCH2Q9Y6C9 303 aa14.6□□□□□ -0.07
LINC00643-202ENST00000553426 TRANK1O15050 2925 aa14.6□□□□□ -0.07
LINC00643-202ENST00000553426 CCDC196A0A1B0GTZ2 297 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 GOLGA8AA7E2F4 631 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 GOLGA8BA8MQT2 603 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 ATP9AO75110 1047 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 KCNA2P16389 499 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 ITGB5P18084 799 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 COL9A3Q14050 684 aaPredicted RBP14.59□□□□□ -0.07
LINC00643-202ENST00000553426 PLEKHG4Q58EX7 1191 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 FAM117BQ6P1L5 589 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 TAF2Q6P1X5 1199 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 TMCO2Q7Z6W1 182 aaPredicted RBP14.59□□□□□ -0.07
LINC00643-202ENST00000553426 LMBR1Q8WVP7 490 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 APBB2Q92870 758 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 TGS1Q96RS0 853 aaKnown RBP14.59□□□□□ -0.07
LINC00643-202ENST00000553426 SMARCAD1Q9H4L7 1026 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 AZI2Q9H6S1 392 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 RIC8AQ9NPQ8 531 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 JADE2Q9NQC1 790 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 UBIAD1Q9Y5Z9 338 aa14.59□□□□□ -0.07
LINC00643-202ENST00000553426 V9GY48 417 aaPredicted RBP14.59□□□□□ -0.07
LINC00643-202ENST00000553426 REV3LO60673 3130 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 KLF18A0A0U1RQI7 1052 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 LCHNA4D1U4 455 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 RPLP2P05387 115 aaKnown RBP14.58□□□□□ -0.08
LINC00643-202ENST00000553426 ADCY7P51828 1080 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 RCAN1P53805 252 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 PPFIA1Q13136 1202 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 WWC2Q6AWC2 1192 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 RASEFQ8IZ41 740 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 CCDC136Q96JN2 1154 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 TCEANC2Q96MN5 208 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 SDF4Q9BRK5 362 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 JPH1Q9HDC5 661 aaPredicted RBP14.58□□□□□ -0.08
LINC00643-202ENST00000553426 LMCD1Q9NZU5 365 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 COG5Q9UP83 839 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 CNTNAP5Q8WYK1 1306 aa14.58□□□□□ -0.08
LINC00643-202ENST00000553426 SMCO2A6NFE2 343 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 EPOPA6NHQ4 379 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 ZNF76P36508 570 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 GRB10Q13322 594 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 AP3B2Q13367 1082 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 TCTN1Q2MV58 587 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 ADCK5Q3MIX3 580 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.57□□□□□ -0.08
LINC00643-202ENST00000553426 SKAP1Q86WV1 359 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 ADAMTS19Q8TE59 1207 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 MXRA8Q9BRK3 442 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 KCNH7Q9NS40 1196 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 SLC9A2Q9UBY0 812 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 MTUS1Q9ULD2 1270 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 BRPF3Q9ULD4 1205 aa14.57□□□□□ -0.08
LINC00643-202ENST00000553426 GSTTP1A0A1W2PQM5 241 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 LINC01553A4QN01 128 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 ARHGEF15O94989 841 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 MARK3P27448 753 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 METAP2P50579 478 aaKnown RBP eCLIP14.56□□□□□ -0.08
LINC00643-202ENST00000553426 ERVK-21P61565 698 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 ADAM17P78536 824 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 GRIK4Q16099 956 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 CEP55Q53EZ4 464 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 CCDC12Q8WUD4 166 aaPredicted RBP14.56□□□□□ -0.08
LINC00643-202ENST00000553426 YME1L1Q96TA2 773 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 ANO3Q9BYT9 981 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 IFIH1Q9BYX4 1025 aaKnown RBP14.56□□□□□ -0.08
LINC00643-202ENST00000553426 BARHL2Q9NY43 387 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 TUBE1Q9UJT0 475 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 TELO2Q9Y4R8 837 aa14.56□□□□□ -0.08
LINC00643-202ENST00000553426 RRN3P2A6NIE6 340 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 STXBP3O00186 592 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 UPP2O95045 317 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 AKAP17AQ02040 695 aaKnown RBP14.55□□□□□ -0.08
LINC00643-202ENST00000553426 FAM26DQ5JW98 314 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 MCTP2Q6DN12 878 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 BLOC1S2Q6QNY1 142 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 RPAINQ86UA6 219 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 HLA-CQ95604 372 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 JAKMIP1Q96N16 626 aaKnown RBP14.55□□□□□ -0.08
LINC00643-202ENST00000553426 SAMD11Q96NU1 681 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 UHRF1Q96T88 793 aaPredicted RBP14.55□□□□□ -0.08
LINC00643-202ENST00000553426 TRPC6Q9Y210 931 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 NFASCO94856 1347 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 DOCK5Q9H7D0 1870 aa14.55□□□□□ -0.08
LINC00643-202ENST00000553426 KAT6AQ92794 2004 aa14.54□□□□□ -0.08
LINC00643-202ENST00000553426 PRRC2BQ5JSZ5 2229 aaKnown RBP14.54□□□□□ -0.08
LINC00643-202ENST00000553426 M0QZ92 97 aa14.54□□□□□ -0.08
LINC00643-202ENST00000553426 LPXNO60711 386 aa14.54□□□□□ -0.08
LINC00643-202ENST00000553426 REC8O95072 547 aa14.54□□□□□ -0.08
LINC00643-202ENST00000553426 PSMA5P28066 241 aa14.54□□□□□ -0.08
LINC00643-202ENST00000553426 IGBP1P78318 339 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms