RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	CLIC2	O15247	247 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	C2orf54	Q08AI8	447 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	USP17L2	Q6R6M4	530 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	RNF169	Q8NCN4	708 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	NCAPG	Q9BPX3	1015 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	SNX25	Q9H3E2	840 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	BAG2	O95816	211 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	SLC16A2	P36021	539 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	GOLGA8F	Q08AF8	430 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	GOLGA8DP	Q0D2H9	430 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	TMEM179	Q6ZVK1	233 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	METTL23	Q86XA0	190 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	NUB1	Q9Y5A7	615 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	ANO9	A1A5B4	782 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	INO80B-WBP1	J3KQ70	363 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	ZBTB24	O43167	697 aa	Predicted RBP	12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	S100B	P04271	92 aa	Predicted RBP	12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	EAPP	Q56P03	285 aa	Predicted RBP	12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	INO80B	Q9C086	356 aa	Predicted RBP	12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	CDHR2	Q9BYE9	1310 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	IPO5	O00410	1097 aa	Known RBP	12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	COBL	O75128	1261 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	LRRN2	O75325	713 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	TTC4	O95801	387 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	TOB2	Q14106	344 aa	Predicted RBP	12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	MMEL1	Q495T6	779 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	NLRP7	Q8WX94	980 aa		12.47	□□□□□ -0.41
SYNE2-208	ENST00000553289	PVALEF	A0A1B0GWK0	134 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	MIF4GD	A9UHW6	222 aa	Known RBP	12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	WDR46	O15213	610 aa	Known RBP	12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	FTCD	O95954	541 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	LDHA	P00338	332 aa	Known RBP	12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	STX1B	P61266	288 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	ADCY2	Q08462	1091 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	MYO1E	Q12965	1108 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	HSP90AA5P	Q58FG0	334 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	LRGUK	Q96M69	825 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	FMO2	Q99518	471 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	TXLNG	Q9NUQ3	528 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	THEG	Q9P2T0	379 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	AKT3	Q9Y243	479 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289		A0A087WUV0	522 aa	Predicted RBP	12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	PODXL	O00592	558 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	MCAM	P43121	646 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	DR1	Q01658	176 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	NNT	Q13423	1086 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	ALX1	Q15699	326 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	PFKFB3	Q16875	520 aa	Predicted RBP	12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	C6orf118	Q5T5N4	469 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	JADE1	Q6IE81	842 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	CEP72	Q9P209	647 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	ATP8B3	O60423	1300 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	PLEKHG2	Q9H7P9	1386 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	NPR1	P16066	1061 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	IGBP1	P78318	339 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	IFT88	Q13099	833 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	ALKBH5	Q6P6C2	394 aa	Known RBP	12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	SESTD1	Q86VW0	696 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	PGBD1	Q96JS3	809 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	BEGAIN	Q9BUH8	593 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	EPS15L1	Q9UBC2	864 aa		12.46	□□□□□ -0.41
SYNE2-208	ENST00000553289	LGALS16	A8MUM7	142 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	RASGRF2	O14827	1237 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	TTI1	O43156	1089 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	CTNND1	O60716	968 aa	Known RBP	12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	GDF11	O95390	407 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	CLCN6	P51797	869 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	JAK3	P52333	1124 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	RWDD2B	P57060	319 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	HDAC11	Q96DB2	347 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	SLC38A10	Q9HBR0	1119 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	RRP15	Q9Y3B9	282 aa	Known RBP	12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	CLRN2	A0PK11	232 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	TYW5	A2RUC4	315 aa	Known RBP	12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	OPHN1	O60890	802 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	MT-ND3	P03897	115 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	IFNAR2	P48551	515 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	CACNB1	Q02641	598 aa	Predicted RBP	12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	DMTN	Q08495	405 aa		12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	BZW1	Q7L1Q6	419 aa	Known RBP	12.46	□□□□□ -0.42
SYNE2-208	ENST00000553289	SORBS3	O60504	671 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	HSPA8	P11142	646 aa	Known RBP	12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	RFC1	P35251	1148 aa	Predicted RBP	12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	UBXN2A	P68543	259 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	CASP8	Q14790	479 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	DPP9	Q86TI2	863 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	PIGB	Q92521	554 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	KIAA1586	Q9HCI6	787 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	SLC12A6	Q9UHW9	1150 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	MEIS1	O00470	390 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	LAMC1	P11047	1609 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	DYNLL2	Q96FJ2	89 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	PCIF1	Q9H4Z3	704 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	MAP3K4	Q9Y6R4	1608 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	IQGAP3	Q86VI3	1631 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	ACTN1	P12814	892 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	SERPINB6	P35237	376 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	BIRC2	Q13490	618 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	ANKRD20A4	Q4UJ75	823 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	ANKRD20A8P	Q5CZ79	823 aa		12.45	□□□□□ -0.42

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