RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PPP1R7Q15435 360 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 ECM1Q16610 540 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 FAM133BQ5BKY9 247 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 FAM83BQ5T0W9 1011 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 SOGA3Q5TF21 947 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 USP17L1Q7RTZ2 530 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 ADAT2Q7Z6V5 191 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 SPATS2Q86XZ4 545 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 SPICE1Q8N0Z3 855 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 UHMK1Q8TAS1 419 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 NSMCE1Q8WV22 266 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 RUBCNQ92622 972 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 CCDC47Q96A33 483 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 TRIM51Q9BSJ1 452 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 ISCUQ9H1K1 167 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 ADAM7Q9H2U9 754 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 EPB41L4BQ9H329 900 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 RBM28Q9NW13 759 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 SRP68Q9UHB9 627 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 MYH3P11055 1940 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 TNS2Q63HR2 1409 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 C5orf60A6NFR6 353 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 SMIM23A6NLE4 172 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 RBAK-RBAKDNI3L0D1 243 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 CCNT1O60563 726 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 CLTAP09496 248 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 MYBL1P10243 752 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 HIBADHP31937 336 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 PPP2R2AP63151 447 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 KCNJ2P63252 427 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 IFI35P80217 286 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 IKQ13123 557 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 GRB10Q13322 594 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 MKRN4PQ13434 485 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 PICALMQ13492 652 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 TMED8Q6PL24 325 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 CACNA2D4Q7Z3S7 1137 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 TBC1D1Q86TI0 1168 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 TEX11Q8IYF3 940 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 METTL13Q8N6R0 699 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 WHAMMQ8TF30 809 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 SCFD2Q8WU76 684 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 CELF1Q92879 486 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 PCDHGC5Q9Y5F6 944 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 PLCH1Q4KWH8 1693 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 CACNA1SQ13698 1873 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 XIRP1Q702N8 1843 aaKnown RBP5.32□□□□□ -1.56
LIMA1-214ENST00000552783 BICDL2A1A5D9 508 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 POTEMA6NI47 508 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 C6orf229H3BNL8 230 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 HGSO14964 777 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 DDAH1O94760 285 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 FGRP09769 529 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 USP17L8P0C7I0 530 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 KIF5BP33176 963 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 TXKP42681 527 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 DIXDC1Q155Q3 683 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 MAN2A1Q16706 1144 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 PARP10Q53GL7 1025 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 C3orf67Q6ZVT6 689 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 TMC3Q7Z5M5 1100 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 PNMA8AQ86V59 439 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 MAPKAPK5Q8IW41 473 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 CACNA2D3Q8IZS8 1091 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 SLC44A5Q8NCS7 719 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 NOC3LQ8WTT2 800 aaKnown RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 ANKS1AQ92625 1134 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 ZNF570Q96NI8 536 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 ZNF317Q96PQ6 595 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 PNMA5Q96PV4 448 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 C7orf25Q9BPX7 421 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 MTA3Q9BTC8 594 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 BCAS3Q9H6U6 928 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 ARHGEF10LQ9HCE6 1279 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 ABCF3Q9NUQ8 709 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 TMEM260Q9NX78 707 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 MAD2L2Q9UI95 211 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 AJAP1Q9UKB5 411 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 TRIM33Q9UPN9 1127 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 A6NNZ2 444 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 STXBP3O00186 592 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 MPHOSPH10O00566 681 aaKnown RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 ORC4O43929 436 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 RPS8P62241 208 aaKnown RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 PTK2Q05397 1052 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 DHX9Q08211 1270 aaKnown RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 RAPGEF1Q13905 1077 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 PPP2R5BQ15173 497 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 KRT71Q3SY84 523 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 TUBB8Q3ZCM7 444 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 LACTB2Q53H82 288 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 CPLX4Q7Z7G2 160 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 RNF10Q8N5U6 811 aaKnown RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 MARCH10Q8NA82 808 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 AGAP11Q8TF27 550 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 TGFBRAP1Q8WUH2 860 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 LSM14BQ9BX40 385 aaKnown RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms