RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CALRP27797 417 aaKnown RBP16.39■□□□□ 0.21
CUX1-214ENST00000550008 DALRD3Q5D0E6 543 aaKnown RBP16.39■□□□□ 0.21
CUX1-214ENST00000550008 CCSER1Q9C0I3 900 aa16.39■□□□□ 0.21
CUX1-214ENST00000550008 JMJD4Q9H9V9 463 aa16.39■□□□□ 0.21
CUX1-214ENST00000550008 KRT71Q3SY84 523 aa16.39■□□□□ 0.21
CUX1-214ENST00000550008 RAD9BQ6WBX8 426 aa16.39■□□□□ 0.21
CUX1-214ENST00000550008 TC2NQ8N9U0 490 aa16.39■□□□□ 0.21
CUX1-214ENST00000550008 GABPB1Q06547 395 aaPredicted RBP16.39■□□□□ 0.21
CUX1-214ENST00000550008 MKRN3Q13064 507 aaKnown RBP16.39■□□□□ 0.21
CUX1-214ENST00000550008 ZNF365Q70YC5 407 aa16.39■□□□□ 0.21
CUX1-214ENST00000550008 RTKN2Q8IZC4 609 aa16.39■□□□□ 0.21
CUX1-214ENST00000550008 AGTPBP1Q9UPW5 1226 aa16.39■□□□□ 0.21
CUX1-214ENST00000550008 HPSEQ9Y251 543 aa16.39■□□□□ 0.21
CUX1-214ENST00000550008 KCNH2Q12809 1159 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 MICALCLQ6ZW33 695 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 FMNL3Q8IVF7 1028 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 ADSSL1Q8N142 457 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 RMDN3Q96TC7 470 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.38■□□□□ 0.21
CUX1-214ENST00000550008 IFNB1P01574 187 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 KLK7P49862 253 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 GSPT2Q8IYD1 628 aaKnown RBP16.38■□□□□ 0.21
CUX1-214ENST00000550008 NAP1L3Q99457 506 aaPredicted RBP16.38■□□□□ 0.21
CUX1-214ENST00000550008 ZCCHC17Q9NP64 241 aaKnown RBP16.38■□□□□ 0.21
CUX1-214ENST00000550008 UBE2TQ9NPD8 197 aaPredicted RBP16.38■□□□□ 0.21
CUX1-214ENST00000550008 ZHX2Q9Y6X8 837 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 ANKRD26Q9UPS8 1709 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 A0A1B0GTH6 734 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 IVLP07476 585 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 PSMD2Q13200 908 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 AP3B2Q13367 1082 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 ALKBH5Q6P6C2 394 aaKnown RBP16.38■□□□□ 0.21
CUX1-214ENST00000550008 SYCE1Q8N0S2 351 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 MICALL1Q8N3F8 863 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 IWS1Q96ST2 819 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 ABCB6Q9NP58 842 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 IL17RBQ9NRM6 502 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 TSKSQ9UJT2 592 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 DLG5Q8TDM6 1919 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 NCK2O43639 380 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 IRX5P78411 483 aaPredicted RBP16.38■□□□□ 0.21
CUX1-214ENST00000550008 CEP85LQ5SZL2 805 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 RPGRIP1Q96KN7 1286 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 EPB41L5Q9HCM4 733 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 KMT5AQ9NQR1 393 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 C1orf112Q9NSG2 853 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 FAM184BQ9ULE4 1060 aa16.38■□□□□ 0.21
CUX1-214ENST00000550008 UAP1Q16222 522 aaPredicted RBP16.37■□□□□ 0.21
CUX1-214ENST00000550008 RBM43Q6ZSC3 357 aaKnown RBP16.37■□□□□ 0.21
CUX1-214ENST00000550008 ZNF668Q96K58 619 aaPredicted RBP16.37■□□□□ 0.21
CUX1-214ENST00000550008 WRNIP1Q96S55 665 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 PVALEFA0A1B0GWK0 134 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 VGLL3A8MV65 326 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 SLC37A4O43826 429 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 TRIM49P0CI25 452 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 TRIM49CP0CI26 452 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 OSTNP61366 133 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 SLC30A10Q6XR72 485 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 COL23A1Q86Y22 540 aaPredicted RBP16.37■□□□□ 0.21
CUX1-214ENST00000550008 CERKQ8TCT0 537 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.37■□□□□ 0.21
CUX1-214ENST00000550008 PIM2Q9P1W9 311 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 PACSIN2Q9UNF0 486 aaPredicted RBP16.37■□□□□ 0.21
CUX1-214ENST00000550008 PNMA6AP0CW24 399 aaPredicted RBP16.37■□□□□ 0.21
CUX1-214ENST00000550008 TMED8Q6PL24 325 aaPredicted RBP16.37■□□□□ 0.21
CUX1-214ENST00000550008 CCDC170Q8IYT3 715 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 GOLGA5Q8TBA6 731 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 CCDC77Q9BR77 488 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 RTFDC1Q9BY42 306 aaPredicted RBP16.37■□□□□ 0.21
CUX1-214ENST00000550008 ZMYND12Q9H0C1 365 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 SALL1Q9NSC2 1324 aa16.37■□□□□ 0.21
CUX1-214ENST00000550008 GAP43P17677 238 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 PPP4CP60510 307 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 NR1I3Q14994 352 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 LIN9Q5TKA1 542 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 CAPN12Q6ZSI9 719 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 ARFGAP2Q8N6H7 521 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 FBXO28Q9NVF7 368 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 HEXIM1O94992 359 aaKnown RBP16.36■□□□□ 0.21
CUX1-214ENST00000550008 KIF4AO95239 1232 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 NR3C1P04150 777 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 MARK3P27448 753 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 AP1M1Q9BXS5 423 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 RIC1Q4ADV7 1423 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 NMT1P30419 496 aaKnown RBP16.36■□□□□ 0.21
CUX1-214ENST00000550008 GCLMP48507 274 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 STRIP1Q5VSL9 837 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 RNF207Q6ZRF8 634 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 GUF1Q8N442 669 aaKnown RBP16.36■□□□□ 0.21
CUX1-214ENST00000550008 TMEM39BQ9GZU3 492 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 FAN1Q9Y2M0 1017 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 MON2Q7Z3U7 1717 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 RGPD8O14715 1765 aaPredicted RBP16.36■□□□□ 0.21
CUX1-214ENST00000550008 IPO5O00410 1097 aaKnown RBP16.36■□□□□ 0.21
CUX1-214ENST00000550008 GPATCH11Q8N954 259 aa16.36■□□□□ 0.21
CUX1-214ENST00000550008 PPP1R3GB7ZBB8 358 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 VIMP08670 466 aaKnown RBP16.35■□□□□ 0.21
CUX1-214ENST00000550008 MXI1P50539 228 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 FAM160B2Q86V87 743 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 LRRC45Q96CN5 670 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms