RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 KDM3AQ9Y4C1 1321 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 POLR2AP24928 1970 aaKnown RBP6.97□□□□□ -1.29
SYNE1-239ENST00000545694 CLRN2A0PK11 232 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 SPDYE3A6NKU9 549 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L10C9JJH3 530 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 TMEM232C9JQI7 657 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 WDR46O15213 610 aaKnown RBP6.96□□□□□ -1.3
SYNE1-239ENST00000545694 ZNF500O60304 480 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-239ENST00000545694 STAT6P42226 847 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 DPYDQ12882 1025 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 PNOCQ13519 176 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 STIM1Q13586 685 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 RASA3Q14644 834 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 DPCR1Q3MIW9 517 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 JAKMIP3Q5VZ66 844 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 CNNM4Q6P4Q7 775 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 FOXR1Q6PIV2 292 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 C11orf57Q6ZUT1 292 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-239ENST00000545694 GPC2Q8N158 579 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 DHX58Q96C10 678 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 PAGE5Q96GU1 130 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 EPSTI1Q96J88 318 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 FAM20AQ96MK3 541 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 MTMR9Q96QG7 549 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 CTAGE1Q96RT6 745 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 ZNF341Q9BYN7 854 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 NT5C3AQ9H0P0 336 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 RANBP17Q9H2T7 1088 aaKnown RBP6.96□□□□□ -1.3
SYNE1-239ENST00000545694 AS3MTQ9HBK9 375 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 KBTBD4Q9NVX7 518 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 BIN2Q9UBW5 565 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-239ENST00000545694 CNOT7Q9UIV1 285 aaKnown RBP6.96□□□□□ -1.3
SYNE1-239ENST00000545694 MRPL11Q9Y3B7 192 aaKnown RBP6.96□□□□□ -1.3
SYNE1-239ENST00000545694 DNMT3AQ9Y6K1 912 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-239ENST00000545694 ABCB11O95342 1321 aa6.96□□□□□ -1.3
SYNE1-239ENST00000545694 RBBP6Q7Z6E9 1792 aaKnown RBP6.95□□□□□ -1.3
SYNE1-239ENST00000545694 SMCHD1A6NHR9 2005 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 PHF20L1A8MW92 1017 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 CYP3A4P08684 503 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 MUTP22033 750 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 CIITAP33076 1130 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 SREBF1P36956 1147 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 SCTRP47872 440 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 GMPSP49915 693 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-239ENST00000545694 ERVK-9P63128 1117 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 GHRHRQ02643 423 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 GRIN1Q05586 938 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 SPAG1Q07617 926 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 IKQ13123 557 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-239ENST00000545694 KIF4BQ2VIQ3 1234 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 NBPF9Q3BBW0 867 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 SUPT20HL1Q3ZLR7 823 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 Q4G0T1 1027 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 COBLL1Q53SF7 1204 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 KRT79Q5XKE5 535 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 TTBK2Q6IQ55 1244 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 FOXR2Q6PJQ5 311 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 CABP7Q86V35 215 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 MCF2L2Q86YR7 1114 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 DRC7Q8IY82 874 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 AOPEPQ8N6M6 819 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 PDILTQ8N807 584 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 ANKRD20A12PQ8NF67 263 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 RASSF8Q8NHQ8 419 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 RASGRP4Q8TDF6 673 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 COA7Q96BR5 231 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 CDK5RAP3Q96JB5 506 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 TEPSINQ96N21 525 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 WDR18Q9BV38 432 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 ANO3Q9BYT9 981 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 TMEM39BQ9GZU3 492 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 KIAA1683Q9H0B3 1180 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 PPP1R1BQ9UD71 204 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-239ENST00000545694 DDX25Q9UHL0 483 aaKnown RBP6.95□□□□□ -1.3
SYNE1-239ENST00000545694 ZNF112Q9UJU3 913 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 MAN1B1Q9UKM7 699 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 PRR12Q9ULL5 1215 aa6.95□□□□□ -1.3
SYNE1-239ENST00000545694 PVALEFA0A1B0GWK0 134 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 A0A1W2PRG0 241 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 FAM196BA6NMK8 535 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 C19orf81C9J6K1 198 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 MEIS2O14770 477 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 RAD21O60216 631 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 MARCH6O60337 910 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 PPP1R11O60927 126 aaPredicted RBP6.94□□□□□ -1.3
SYNE1-239ENST00000545694 GPC1P35052 558 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 SLC16A2P36021 539 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 PSMD2Q13200 908 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 NCAPHQ15003 741 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 IL17AQ16552 155 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 NOM1Q5C9Z4 860 aaKnown RBP6.94□□□□□ -1.3
SYNE1-239ENST00000545694 SPECC1Q5M775 1068 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 HYIQ5T013 277 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 ZNF658Q5TYW1 1059 aaPredicted RBP6.94□□□□□ -1.3
SYNE1-239ENST00000545694 SPATA1Q5VX52 437 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 HAUS3Q68CZ6 603 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 USP49Q70CQ1 688 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 KRT26Q7Z3Y9 468 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 CLEC10AQ8IUN9 316 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 PRPF38AQ8NAV1 312 aaKnown RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms