RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 R4GN57 208 aa18.1■□□□□ 0.49
CLSTN3-216ENST00000545663 TSPY2A6NKD2 308 aa18.09■□□□□ 0.49
CLSTN3-216ENST00000545663 PATL2C9JE40 543 aaKnown RBP18.09■□□□□ 0.49
CLSTN3-216ENST00000545663 TECP42680 631 aa18.09■□□□□ 0.49
CLSTN3-216ENST00000545663 PPARAQ07869 468 aa18.09■□□□□ 0.49
CLSTN3-216ENST00000545663 NAALADL2Q58DX5 795 aa18.09■□□□□ 0.49
CLSTN3-216ENST00000545663 FAM26DQ5JW98 314 aa18.09■□□□□ 0.49
CLSTN3-216ENST00000545663 RMDN3Q96TC7 470 aa18.09■□□□□ 0.49
CLSTN3-216ENST00000545663 BCAS3Q9H6U6 928 aa18.09■□□□□ 0.49
CLSTN3-216ENST00000545663 OTOGLQ3ZCN5 2332 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 CAND2O75155 1236 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 NPR3P17342 541 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 EIF2AK2P19525 551 aaKnown RBP18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 GATMP50440 423 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 ERVFC1P60507 584 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 SP2Q02086 613 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 CTDSPL2Q05D32 466 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 DUSP6Q16828 381 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 RSPO4Q2I0M5 234 aaPredicted RBP18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 ANKRD54Q6NXT1 300 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 LLGL2Q6P1M3 1020 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 CCDC105Q8IYK2 499 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 RGS22Q8NE09 1264 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 APPBP2Q92624 585 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 MYH7BA7E2Y1 1941 aa18.08■□□□□ 0.48
CLSTN3-216ENST00000545663 H3BRB1 525 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 EIF3JO75822 258 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 NOVP48745 357 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 COL9A2Q14055 689 aaPredicted RBP18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 LPIN1Q14693 890 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 CELF3Q5SZQ8 465 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 CRIPAKQ8N1N5 446 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 DTWD2Q8NBA8 298 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 CYP2W1Q8TAV3 490 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 LINC01599Q8WXQ3 324 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 IWS1Q96ST2 819 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 HINFPQ9BQA5 517 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 CPVLQ9H3G5 476 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 TUT1Q9H6E5 874 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 EHMT1Q9H9B1 1298 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 KIAA1217Q5T5P2 1943 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 KIAA1671Q9BY89 1806 aa18.07■□□□□ 0.48
CLSTN3-216ENST00000545663 WDR19Q8NEZ3 1342 aa18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 RNF113AO15541 343 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 GGPS1O95749 300 aa18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 SLC3A2P08195 630 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 GNAT2P19087 354 aa18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 KCNC3Q14003 757 aa18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 PPP4R3BQ5MIZ7 849 aa18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 ARHGEF16Q5VV41 709 aa18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 RTN4RL1Q86UN2 441 aaPredicted RBP18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 CMTR2Q8IYT2 770 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 TMEM47Q9BQJ4 181 aa18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 POMKQ9H5K3 350 aa18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 NR2E1Q9Y466 385 aa18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 ANKRD11Q6UB99 2663 aaPredicted RBP18.06■□□□□ 0.48
CLSTN3-216ENST00000545663 TTC3P53804 2025 aa18.05■□□□□ 0.48
CLSTN3-216ENST00000545663 RANBP6O60518 1105 aaKnown RBP18.05■□□□□ 0.48
CLSTN3-216ENST00000545663 NR3C2P08235 984 aa18.05■□□□□ 0.48
CLSTN3-216ENST00000545663 AOC1P19801 751 aa18.05■□□□□ 0.48
CLSTN3-216ENST00000545663 TMEM184AQ6ZMB5 413 aa18.05■□□□□ 0.48
CLSTN3-216ENST00000545663 FTSJ3Q8IY81 847 aaKnown RBP18.05■□□□□ 0.48
CLSTN3-216ENST00000545663 GPKOWQ92917 476 aaPredicted RBP eCLIP18.05■□□□□ 0.484e-9■■■■■ 56.5
CLSTN3-216ENST00000545663 ZFP91Q96JP5 570 aaPredicted RBP18.05■□□□□ 0.48
CLSTN3-216ENST00000545663 SEC62Q99442 399 aaKnown RBP18.05■□□□□ 0.48
CLSTN3-216ENST00000545663 LIMD1Q9UGP4 676 aa18.05■□□□□ 0.48
CLSTN3-216ENST00000545663 PLXNA4Q9HCM2 1894 aa18.05■□□□□ 0.48
CLSTN3-216ENST00000545663 RUFY4Q6ZNE9 571 aa18.04■□□□□ 0.48
CLSTN3-216ENST00000545663 PNMA2Q9UL42 364 aa18.04■□□□□ 0.48
CLSTN3-216ENST00000545663 GPR179Q6PRD1 2367 aa18.04■□□□□ 0.48
CLSTN3-216ENST00000545663 PKD1L2Q7Z442 2459 aa18.04■□□□□ 0.48
CLSTN3-216ENST00000545663 LGALS2P05162 132 aa18.03■□□□□ 0.48
CLSTN3-216ENST00000545663 WEE2P0C1S8 567 aa18.03■□□□□ 0.48
CLSTN3-216ENST00000545663 PDHBP11177 359 aa18.03■□□□□ 0.48
CLSTN3-216ENST00000545663 APOBRQ0VD83 1088 aa18.03■□□□□ 0.48
CLSTN3-216ENST00000545663 SIRT2Q8IXJ6 389 aa18.03■□□□□ 0.48
CLSTN3-216ENST00000545663 KBTBD3Q8NAB2 608 aa18.03■□□□□ 0.48
CLSTN3-216ENST00000545663 NACAP1Q9BZK3 213 aa18.03■□□□□ 0.48
CLSTN3-216ENST00000545663 NAPBQ9H115 298 aa18.03■□□□□ 0.48
CLSTN3-216ENST00000545663 PXMP2Q9NR77 195 aa18.03■□□□□ 0.48
CLSTN3-216ENST00000545663 GOLGA8HP0CJ92 632 aa18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 TOP1P11387 765 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 MYCLP12524 364 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 UBA1P22314 1058 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 ADAM17P78536 824 aa18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 ARHGAP4P98171 946 aa18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 ZNF543Q08ER8 600 aa18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 MGAT3Q09327 533 aa18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 LMBR1Q8WVP7 490 aa18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 RIN2Q8WYP3 895 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 CDCA3Q99618 268 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 UBA5Q9GZZ9 404 aa18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 SEMA4AQ9H3S1 761 aa18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 AGO3Q9H9G7 860 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 TELO2Q9Y4R8 837 aa18.02■□□□□ 0.48
CLSTN3-216ENST00000545663 IBSPP21815 317 aaPredicted RBP18.01■□□□□ 0.47
CLSTN3-216ENST00000545663 TRIM50Q86XT4 487 aa18.01■□□□□ 0.47
CLSTN3-216ENST00000545663 RUBCNQ92622 972 aa18.01■□□□□ 0.47
CLSTN3-216ENST00000545663 MLXIPQ9HAP2 919 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms