RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 DR1Q01658 176 aa15.46■□□□□ 0.07
LIMS1-215ENST00000544547 TTMPQ5BVD1 217 aa15.46■□□□□ 0.07
LIMS1-215ENST00000544547 CFAP61Q8NHU2 1237 aa15.46■□□□□ 0.07
LIMS1-215ENST00000544547 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.46■□□□□ 0.07
LIMS1-215ENST00000544547 hCG_2014768A0A024R1R8 64 aa15.46■□□□□ 0.07
LIMS1-215ENST00000544547 CCT8L1PA6NM43 557 aa15.46■□□□□ 0.07
LIMS1-215ENST00000544547 ATP2A2P16615 1042 aaKnown RBP15.46■□□□□ 0.07
LIMS1-215ENST00000544547 HIBADHP31937 336 aaKnown RBP15.46■□□□□ 0.07
LIMS1-215ENST00000544547 TOB1P50616 345 aaPredicted RBP15.46■□□□□ 0.07
LIMS1-215ENST00000544547 ZNF211Q13398 564 aaPredicted RBP15.46■□□□□ 0.07
LIMS1-215ENST00000544547 SNX1Q13596 522 aa15.46■□□□□ 0.07
LIMS1-215ENST00000544547 CFAP157Q5JU67 520 aa15.46■□□□□ 0.07
LIMS1-215ENST00000544547 FUKQ8N0W3 1084 aa15.46■□□□□ 0.07
LIMS1-215ENST00000544547 PBKQ96KB5 322 aa15.46■□□□□ 0.07
LIMS1-215ENST00000544547 EIF3BP55884 814 aaKnown RBP15.46■□□□□ 0.06
LIMS1-215ENST00000544547 CYP4F22Q6NT55 531 aa15.46■□□□□ 0.06
LIMS1-215ENST00000544547 RAPGEF5Q92565 580 aa15.46■□□□□ 0.06
LIMS1-215ENST00000544547 ANKRD2Q9GZV1 360 aa15.46■□□□□ 0.06
LIMS1-215ENST00000544547 POC1B-GALNT4F8VUJ3 575 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 OPLAHO14841 1288 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 TRIP13Q15645 432 aaPredicted RBP15.45■□□□□ 0.06
LIMS1-215ENST00000544547 RBM26Q5T8P6 1007 aaKnown RBP15.45■□□□□ 0.06
LIMS1-215ENST00000544547 KRT25Q7Z3Z0 450 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 STAG2Q8N3U4 1231 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 SPDYE1Q8NFV5 336 aaPredicted RBP15.45■□□□□ 0.06
LIMS1-215ENST00000544547 ABTB1Q969K4 478 aaPredicted RBP15.45■□□□□ 0.06
LIMS1-215ENST00000544547 XPO6Q96QU8 1125 aaKnown RBP15.45■□□□□ 0.06
LIMS1-215ENST00000544547 VPS37BQ9H9H4 285 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 GPCPD1Q9NPB8 672 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 DDX20Q9UHI6 824 aaKnown RBP15.45■□□□□ 0.06
LIMS1-215ENST00000544547 COL15A1P39059 1388 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 TMEM94Q12767 1356 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 GNPATO15228 680 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 FAM13AO94988 1023 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 FKBP3Q00688 224 aaKnown RBP15.45■□□□□ 0.06
LIMS1-215ENST00000544547 MESDQ14696 234 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 EXOC3L4Q17RC7 722 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 HAUS3Q68CZ6 603 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 PNMA1Q8ND90 353 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 CASKIN2Q8WXE0 1202 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 PARP2Q9UGN5 583 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 ADCY8P40145 1251 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 PANK4Q9NVE7 773 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 TTI1O43156 1089 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 FSBPO95073 299 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 HSD17B3P37058 310 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 TRAPPC10P48553 1259 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 REXO1Q8N1G1 1221 aaKnown RBP15.45■□□□□ 0.06
LIMS1-215ENST00000544547 IGDCC4Q8TDY8 1250 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 SYNCQ9H7C4 482 aa15.45■□□□□ 0.06
LIMS1-215ENST00000544547 PXDNQ92626 1479 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 FANCGO15287 622 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 PRPF3O43395 683 aaKnown RBP15.44■□□□□ 0.06
LIMS1-215ENST00000544547 NMT2O60551 498 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 SRGNP10124 158 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 KCNQ4P56696 695 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 MKRN4PQ13434 485 aaPredicted RBP15.44■□□□□ 0.06
LIMS1-215ENST00000544547 FAM83BQ5T0W9 1011 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 ABCC12Q96J65 1359 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 WDR91A4D1P6 747 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 GSG1L2A8MUP6 293 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 KCNB1Q14721 858 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 TRPM8Q7Z2W7 1104 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 MAPKAPK5Q8IW41 473 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 ADSSL1Q8N142 457 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 LARP4BQ92615 738 aaKnown RBP15.44■□□□□ 0.06
LIMS1-215ENST00000544547 ISCA1Q9BUE6 129 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 GFPT2O94808 682 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 PHLDB3Q6NSJ2 640 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 HOOK2Q96ED9 719 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 TRIM51Q9BSJ1 452 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 PITPNM3Q9BZ71 974 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 CELF4Q9BZC1 486 aaKnown RBP15.44■□□□□ 0.06
LIMS1-215ENST00000544547 CCDC87Q9NVE4 849 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 COL4A3BPQ9Y5P4 624 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 ITSN1Q15811 1721 aa15.44■□□□□ 0.06
LIMS1-215ENST00000544547 CFAP73A6NFT4 308 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 IGF2BP3O00425 579 aaKnown RBP eCLIP15.43■□□□□ 0.06
LIMS1-215ENST00000544547 GCNT3O95395 438 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 PREPLQ4J6C6 727 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-215ENST00000544547 C6orf118Q5T5N4 469 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 GPBP1Q86WP2 473 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 RAB3IL1Q8TBN0 382 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 P3H4Q92791 437 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 STK36Q9NRP7 1315 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 RASSF10A6NK89 507 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 TCP11X1B4DZS4 312 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 SKIP12755 728 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 CDKAL1Q5VV42 579 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 TAB3Q8N5C8 712 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-215ENST00000544547 PDCD7Q8N8D1 485 aaKnown RBP15.43■□□□□ 0.06
LIMS1-215ENST00000544547 LRRC8CQ8TDW0 803 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 AENQ8WTP8 325 aaKnown RBP15.43■□□□□ 0.06
LIMS1-215ENST00000544547 NUDCD1Q96RS6 583 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 NOC2LQ9Y3T9 749 aaKnown RBP15.43■□□□□ 0.06
LIMS1-215ENST00000544547 NR2F2P24468 414 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 NEK8Q86SG6 692 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 GJA10Q969M2 543 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 WDR17Q8IZU2 1322 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 SETSIPP0DME0 302 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms