RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 VAV3Q9UKW4 847 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 NOL4O94818 638 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 KIAA1755Q5JYT7 1200 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 CYP2W1Q8TAV3 490 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 MMS19Q96T76 1030 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 MAP2K7O14733 419 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 C21orf2O43822 256 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 AKR1B10O60218 316 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 CASP5P51878 434 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 STAT2P52630 851 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 VSNL1P62760 191 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 ADAM9Q13443 819 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 ASTE1Q2TB18 679 aaPredicted RBP19.9■□□□□ 0.78
VIM-209ENST00000544301 EDRF1Q3B7T1 1238 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 PPP4R3CPQ6ZMV5 832 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 GPIHBP1Q8IV16 184 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 ACER1Q8TDN7 264 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 SH2D4AQ9H788 454 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 ARHGEF10LQ9HCE6 1279 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 CEP72Q9P209 647 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.9■□□□□ 0.78
VIM-209ENST00000544301 SPDYE2BA6NHP3 402 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 ERLIN1O75477 346 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 SPDYE6P0CI01 402 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 SMC1AQ14683 1233 aaKnown RBP19.9■□□□□ 0.78
VIM-209ENST00000544301 HGSNATQ68CP4 663 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 REEP2Q9BRK0 252 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 ABCB6Q9NP58 842 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 TMOD2Q9NZR1 351 aa19.9■□□□□ 0.78
VIM-209ENST00000544301 GOLGB1Q14789 3259 aaKnown RBP19.89■□□□□ 0.78
VIM-209ENST00000544301 CLRN2A0PK11 232 aa19.89■□□□□ 0.77
VIM-209ENST00000544301 TUBBP07437 444 aa19.89■□□□□ 0.77
VIM-209ENST00000544301 ZNF76P36508 570 aa19.89■□□□□ 0.77
VIM-209ENST00000544301 MAPK8IP2Q13387 824 aaPredicted RBP19.89■□□□□ 0.77
VIM-209ENST00000544301 CAPZA3Q96KX2 299 aa19.89■□□□□ 0.77
VIM-209ENST00000544301 LSM14BQ9BX40 385 aaKnown RBP19.89■□□□□ 0.77
VIM-209ENST00000544301 NLRC4Q9NPP4 1024 aa19.89■□□□□ 0.77
VIM-209ENST00000544301 TMX2Q9Y320 296 aa19.89■□□□□ 0.77
VIM-209ENST00000544301 TNS1Q9HBL0 1735 aaKnown RBP19.89■□□□□ 0.77
VIM-209ENST00000544301 SSU72P8A0A1W2PR75 194 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 CKAP4Q07065 602 aaKnown RBP19.88■□□□□ 0.77
VIM-209ENST00000544301 FAM83BQ5T0W9 1011 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 RSBN1LQ6PCB5 846 aaPredicted RBP19.88■□□□□ 0.77
VIM-209ENST00000544301 ZNF771Q7L3S4 317 aaPredicted RBP19.88■□□□□ 0.77
VIM-209ENST00000544301 EPM2AIP1Q7L775 607 aaPredicted RBP19.88■□□□□ 0.77
VIM-209ENST00000544301 TRIM58Q8NG06 486 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 SYN2Q92777 582 aaPredicted RBP19.88■□□□□ 0.77
VIM-209ENST00000544301 POLR3CQ9BUI4 534 aaPredicted RBP19.88■□□□□ 0.77
VIM-209ENST00000544301 MLXIPQ9HAP2 919 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 FAM184BQ9ULE4 1060 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 SMCHD1A6NHR9 2005 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 IGLV3-22A0A075B6J6 115 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 CETN3O15182 167 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 TACC1O75410 805 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 CYP4A11Q02928 519 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 WDR93Q6P2C0 686 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 SFR1Q86XK3 245 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 FAM151AQ8WW52 585 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 RPGRIP1Q96KN7 1286 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 EIF2AK1Q9BQI3 630 aaKnown RBP19.88■□□□□ 0.77
VIM-209ENST00000544301 NUCKS1Q9H1E3 243 aaKnown RBP19.88■□□□□ 0.77
VIM-209ENST00000544301 ZNF70Q9UC06 446 aaPredicted RBP19.88■□□□□ 0.77
VIM-209ENST00000544301 L1RE1Q9UN81 338 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 JRKLQ9Y4A0 524 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 CAPN6Q9Y6Q1 641 aa19.88■□□□□ 0.77
VIM-209ENST00000544301 PSME4Q14997 1843 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 EML1O00423 815 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 HOXD13P35453 343 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 MAGEA1P43355 309 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 USP14P54578 494 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 FAM193AP78312 1265 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 SLC15A2Q16348 729 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 CRACR2AQ9BSW2 395 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 GOPCQ9HD26 462 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 JADE2Q9NQC1 790 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 TRAF3IP3Q9Y228 551 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 ZNF185O15231 689 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 PJA2O43164 708 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 TLR2O60603 784 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 MOCS3O95396 460 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 NR2F2P24468 414 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 OAS2P29728 719 aaKnown RBP19.87■□□□□ 0.77
VIM-209ENST00000544301 POLR2FP61218 127 aaKnown RBP19.87■□□□□ 0.77
VIM-209ENST00000544301 GFPT1Q06210 699 aaPredicted RBP19.87■□□□□ 0.77
VIM-209ENST00000544301 TRAF1Q13077 416 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 KNOP1Q1ED39 458 aaKnown RBP19.87■□□□□ 0.77
VIM-209ENST00000544301 SFMBT2Q5VUG0 894 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 HDXQ7Z353 690 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 TBC1D5Q92609 795 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 GBP3Q9H0R5 595 aa19.87■□□□□ 0.77
VIM-209ENST00000544301 POLR3GO15318 223 aaPredicted RBP19.86■□□□□ 0.77
VIM-209ENST00000544301 RAD17O75943 681 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 EYA4O95677 639 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 TEX2Q8IWB9 1127 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 GMLQ99445 158 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 WDR18Q9BV38 432 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 RUSC1Q9BVN2 902 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 BHMT2Q9H2M3 363 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 RGL1Q9NZL6 768 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 ZBTB21Q9ULJ3 1066 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms