RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 PSMC6P62333 389 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 FOXK1P85037 733 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 TLE2Q04725 743 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 PRR16Q569H4 304 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 POTEBQ6S5H4 581 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 SLC43A3Q8NBI5 491 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 OXER1Q8TDS5 423 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 GPR20Q99678 358 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 SDF4Q9BRK5 362 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 KATNAL1Q9BW62 490 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 BCAS3Q9H6U6 928 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 PKD2L1Q9P0L9 805 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.09□□□□□ -0.15
VPS33A-207ENST00000542790 LRRC37A2A6NM11 1700 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 NFASCO94856 1347 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 CYP3A7-CYP3A51PA0A087WV96 503 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 BTBD18B2RXH4 712 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 H0YGN5 161 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 IPO5O00410 1097 aaKnown RBP14.08□□□□□ -0.16
VPS33A-207ENST00000542790 PQBP1O60828 265 aaKnown RBP14.08□□□□□ -0.16
VPS33A-207ENST00000542790 CYP3A7P24462 503 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 FOSBP53539 338 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 INF2Q27J81 1249 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 NFRKBQ6P4R8 1299 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 PIK3AP1Q6ZUJ8 805 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 DIS3L2Q8IYB7 885 aaKnown RBP14.08□□□□□ -0.16
VPS33A-207ENST00000542790 FBXO18Q8NFZ0 1043 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 SEPT1Q8WYJ6 367 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 KHSRPQ92945 711 aaKnown RBP eCLIP14.08□□□□□ -0.16
VPS33A-207ENST00000542790 NAP1L4Q99733 375 aaKnown RBP14.08□□□□□ -0.16
VPS33A-207ENST00000542790 ZNF577Q9BSK1 485 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 JPH1Q9HDC5 661 aaPredicted RBP14.08□□□□□ -0.16
VPS33A-207ENST00000542790 TBC1D22BQ9NU19 505 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 PRKAG2Q9UGJ0 569 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 GRIN2DO15399 1336 aa14.08□□□□□ -0.16
VPS33A-207ENST00000542790 TLR3O15455 904 aaKnown RBP14.07□□□□□ -0.16
VPS33A-207ENST00000542790 EDIL3O43854 480 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 SP4Q02446 784 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 PTPN11Q06124 597 aaPredicted RBP14.07□□□□□ -0.16
VPS33A-207ENST00000542790 NR5A1Q13285 461 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 ITGB3BPQ13352 177 aaPredicted RBP14.07□□□□□ -0.16
VPS33A-207ENST00000542790 NBPF20Q3BBV1 942 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 Q4G0T1 1027 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 ARSIQ5FYB1 569 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 PRPF38BQ5VTL8 546 aaKnown RBP14.07□□□□□ -0.16
VPS33A-207ENST00000542790 MOXD1Q6UVY6 613 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 NEK8Q86SG6 692 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 KAT2BQ92831 832 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 SLC9A2Q9UBY0 812 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 SMC3Q9UQE7 1217 aa14.07□□□□□ -0.16
VPS33A-207ENST00000542790 MCM3APO60318 1980 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 H3BRB1 525 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 F2P00734 622 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 LGALS2P05162 132 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 CLTBP09497 229 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 SUPT20HL2P0C7V6 817 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 ZNF286BP0CG31 522 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 GCFC2P16383 781 aaKnown RBP14.06□□□□□ -0.16
VPS33A-207ENST00000542790 PSEN2P49810 448 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 CHMP4BP1P59074 171 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 GUCY1B3Q02153 619 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 CUL4AQ13619 759 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 MFSD10Q14728 455 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 LETM2Q2VYF4 491 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 PPP4R3AQ6IN85 833 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 FAM126BQ8IXS8 530 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 PLPP6Q8IY26 295 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 TNFRSF25Q93038 417 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 LENG9Q96B70 501 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 C16orf70Q9BSU1 422 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 FOXP1Q9H334 677 aaPredicted RBP14.06□□□□□ -0.16
VPS33A-207ENST00000542790 TUT1Q9H6E5 874 aaKnown RBP14.06□□□□□ -0.16
VPS33A-207ENST00000542790 PRDM5Q9NQX1 630 aaPredicted RBP14.06□□□□□ -0.16
VPS33A-207ENST00000542790 TMEM39AQ9NV64 488 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 TCEAL9Q9UHQ7 104 aa14.06□□□□□ -0.16
VPS33A-207ENST00000542790 GSTTP1A0A1W2PQM5 241 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 HAS3O00219 553 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 DHX15O43143 795 aaKnown RBP14.05□□□□□ -0.16
VPS33A-207ENST00000542790 GJB2P29033 226 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 TCF7P36402 384 aaPredicted RBP14.05□□□□□ -0.16
VPS33A-207ENST00000542790 ACTR2P61160 394 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 FAAP100Q0VG06 881 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 GNL2Q13823 731 aaKnown RBP14.05□□□□□ -0.16
VPS33A-207ENST00000542790 KIAA0753Q2KHM9 967 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 FAM47CQ5HY64 1035 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 EARS2Q5JPH6 523 aaKnown RBP14.05□□□□□ -0.16
VPS33A-207ENST00000542790 SESTD1Q86VW0 696 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 C7orf31Q8N865 590 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 SPRYD3Q8NCJ5 442 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 SNX21Q969T3 373 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 MBOAT7Q96N66 472 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 RIT2Q99578 217 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 PDLIM7Q9NR12 457 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 DDX25Q9UHL0 483 aaKnown RBP14.05□□□□□ -0.16
VPS33A-207ENST00000542790 ZNF215Q9UL58 517 aaPredicted RBP14.05□□□□□ -0.16
VPS33A-207ENST00000542790 ZMYND8Q9ULU4 1186 aaPredicted RBP14.05□□□□□ -0.16
VPS33A-207ENST00000542790 TELO2Q9Y4R8 837 aa14.05□□□□□ -0.16
VPS33A-207ENST00000542790 K7ELQ4 463 aaPredicted RBP14.04□□□□□ -0.16
VPS33A-207ENST00000542790 KIAA0355O15063 1070 aa14.04□□□□□ -0.16
VPS33A-207ENST00000542790 MSH4O15457 936 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms