RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 RPAINQ86UA6 219 aa20.62■□□□□ 0.89
CLSTN3-214ENST00000542663 ADHFE1Q8IWW8 467 aa20.62■□□□□ 0.89
CLSTN3-214ENST00000542663 TECTAO75443 2155 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 PNMA6FA0A0J9YX94 578 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 HIP1O00291 1037 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 GRM6O15303 877 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 STAM2O75886 525 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 GNAT1P11488 350 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 CTNNB1P35222 781 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 IRS1P35568 1242 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 DLX2Q07687 328 aaPredicted RBP20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 NEDD9Q14511 834 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 FIBCD1Q8N539 461 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 IL17RAQ96F46 866 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 RTEL1Q9NZ71 1219 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 FAM50BQ9Y247 325 aa20.61■□□□□ 0.89
CLSTN3-214ENST00000542663 ARHGAP4P98171 946 aa20.6■□□□□ 0.89
CLSTN3-214ENST00000542663 NUCB1Q02818 461 aa20.6■□□□□ 0.89
CLSTN3-214ENST00000542663 HYAL1Q12794 435 aa20.6■□□□□ 0.89
CLSTN3-214ENST00000542663 UTP14CQ5TAP6 766 aaKnown RBP20.6■□□□□ 0.89
CLSTN3-214ENST00000542663 RUFY4Q6ZNE9 571 aa20.6■□□□□ 0.89
CLSTN3-214ENST00000542663 FBXL18Q96ME1 805 aa20.6■□□□□ 0.89
CLSTN3-214ENST00000542663 EHMT1Q9H9B1 1298 aa20.6■□□□□ 0.89
CLSTN3-214ENST00000542663 ADGRA3Q8IWK6 1321 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 FNDC1Q4ZHG4 1894 aaPredicted RBP20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 KMT2EQ8IZD2 1858 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 FIBPO43427 364 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 IGHDP01880 384 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 RB1P06400 928 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 BMPR1AP36894 532 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 MRE11P49959 708 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 NHLH1Q02575 133 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 TROAPQ12815 778 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 TRAF1Q13077 416 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 SMAD2Q15796 467 aaKnown RBP20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 CLP1Q92989 425 aaKnown RBP20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 C11orf84Q9BUA3 381 aaPredicted RBP20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 LMAN2LQ9H0V9 348 aa20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 ZNF215Q9UL58 517 aaPredicted RBP20.59■□□□□ 0.89
CLSTN3-214ENST00000542663 MBTPS2O43462 519 aa20.58■□□□□ 0.89
CLSTN3-214ENST00000542663 NCK2O43639 380 aa20.58■□□□□ 0.89
CLSTN3-214ENST00000542663 TBX10O75333 385 aa20.58■□□□□ 0.89
CLSTN3-214ENST00000542663 GHRP10912 638 aa20.58■□□□□ 0.89
CLSTN3-214ENST00000542663 GTF2F1P35269 517 aaKnown RBP eCLIP20.58■□□□□ 0.89
CLSTN3-214ENST00000542663 MGAT3Q09327 533 aa20.58■□□□□ 0.89
CLSTN3-214ENST00000542663 LPIN1Q14693 890 aa20.58■□□□□ 0.89
CLSTN3-214ENST00000542663 CLUL1Q15846 466 aa20.58■□□□□ 0.89
CLSTN3-214ENST00000542663 HFE2Q6ZVN8 426 aa20.58■□□□□ 0.89
CLSTN3-214ENST00000542663 ZNF689Q96CS4 500 aaPredicted RBP20.58■□□□□ 0.89
CLSTN3-214ENST00000542663 NRCAMQ92823 1304 aa20.57■□□□□ 0.88
CLSTN3-214ENST00000542663 SP4Q02446 784 aa20.57■□□□□ 0.88
CLSTN3-214ENST00000542663 CAMK1Q14012 370 aa20.57■□□□□ 0.88
CLSTN3-214ENST00000542663 SENP7Q9BQF6 1050 aa20.57■□□□□ 0.88
CLSTN3-214ENST00000542663 KCNH6Q9H252 994 aa20.57■□□□□ 0.88
CLSTN3-214ENST00000542663 ENPP3O14638 875 aa20.56■□□□□ 0.88
CLSTN3-214ENST00000542663 IFIT3O14879 490 aaKnown RBP20.56■□□□□ 0.88
CLSTN3-214ENST00000542663 LINC01565O15544 149 aa20.56■□□□□ 0.88
CLSTN3-214ENST00000542663 PCNX4Q63HM2 1172 aa20.56■□□□□ 0.88
CLSTN3-214ENST00000542663 PIBF1Q8WXW3 757 aa20.56■□□□□ 0.88
CLSTN3-214ENST00000542663 RWDD1Q9H446 243 aaPredicted RBP20.56■□□□□ 0.88
CLSTN3-214ENST00000542663 RWDD3Q9Y3V2 267 aa20.56■□□□□ 0.88
CLSTN3-214ENST00000542663 TAF6LQ9Y6J9 622 aa20.56■□□□□ 0.88
CLSTN3-214ENST00000542663 MMP1P03956 469 aa20.55■□□□□ 0.88
CLSTN3-214ENST00000542663 CYP21A2P08686 494 aa20.55■□□□□ 0.88
CLSTN3-214ENST00000542663 TCF7P36402 384 aaPredicted RBP20.55■□□□□ 0.88
CLSTN3-214ENST00000542663 USP17L6PQ6QN14 398 aa20.55■□□□□ 0.88
CLSTN3-214ENST00000542663 LINC01599Q8WXQ3 324 aa20.55■□□□□ 0.88
CLSTN3-214ENST00000542663 MUTYHQ9UIF7 546 aa20.55■□□□□ 0.88
CLSTN3-214ENST00000542663 MEIS2O14770 477 aa20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 ATP9AO75110 1047 aa20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 DGKIO75912 1065 aa20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 TRDNQ13061 729 aa20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 HERC4Q5GLZ8 1057 aaPredicted RBP20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 FBXO47Q5MNV8 452 aa20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 MARCH8Q5T0T0 291 aa20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 TAF2Q6P1X5 1199 aa20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 RNF135Q8IUD6 432 aa20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 CRIPAKQ8N1N5 446 aa20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 UPF3BQ9BZI7 483 aaKnown RBP20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 ALG13Q9NP73 1137 aaKnown RBP20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 EVPLQ92817 2033 aa20.54■□□□□ 0.88
CLSTN3-214ENST00000542663 GSTTP1A0A1W2PQM5 241 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 MBLAC1A4D2B0 266 aaPredicted RBP20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 PIK3CDO00329 1044 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 CSPG5O95196 566 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 KCNA2P16389 499 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 PTH1RQ03431 593 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 PPFIA1Q13136 1202 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 ADAM15Q13444 863 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 SMAD4Q13485 552 aaKnown RBP20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 AAMPQ13685 434 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 BTG3Q14201 252 aaPredicted RBP20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 WTAPQ15007 396 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 GRIK4Q16099 956 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 SMARCC2Q8TAQ2 1214 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 DNAJB3Q8WWF6 145 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 IGFLR1Q9H665 355 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 TUBE1Q9UJT0 475 aa20.53■□□□□ 0.88
CLSTN3-214ENST00000542663 DNAJB1P25685 340 aa20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 ANTXR2P58335 489 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms