RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 SUPT3HO75486 399 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 B3GALNT1O75752 331 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 CYP1A2P05177 515 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 ZNF75DP51815 510 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 SH3BGRP55822 239 aaPredicted RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 ARID5BQ14865 1188 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 DOK7Q18PE1 504 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 ADALQ6DHV7 355 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 TMEM53Q6P2H8 277 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 SP8Q8IXZ3 490 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 TEKT4Q8WW24 435 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 MAIP1Q8WWC4 291 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 MASTLQ96GX5 879 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 SPATA17Q96L03 361 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 SAMM50Q9Y512 469 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 TRIM43BA6NCK2 446 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 KDM1AO60341 852 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 PLOD1Q02809 727 aaPredicted RBP12.16□□□□□ -0.46
CDH3-203ENST00000542274 BPHLQ86WA6 291 aaPredicted RBP12.16□□□□□ -0.46
CDH3-203ENST00000542274 FANCBQ8NB91 859 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 RABEP2Q9H5N1 569 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 IP6K2Q9UHH9 426 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 LNPEPQ9UIQ6 1025 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 C2CD2Q9Y426 696 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 MAST2Q6P0Q8 1798 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 UPP2O95045 317 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 VEGFAP15692 232 aaPredicted RBP12.16□□□□□ -0.46
CDH3-203ENST00000542274 IFNAR1P17181 557 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 CNGA1P29973 690 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 MLH1P40692 756 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 CAMK2BQ13554 666 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 ITGA7Q13683 1181 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 BLMHQ13867 455 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 PLCB4Q15147 1175 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 GPR162Q16538 588 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 PLA2G4DQ86XP0 818 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 CCDC13Q8IYE1 715 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 RASSF8Q8NHQ8 419 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 ESR2Q92731 530 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 OPTNQ96CV9 577 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 DYNLL2Q96FJ2 89 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 IWS1Q96ST2 819 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 SDF4Q9BRK5 362 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 NUP58Q9BVL2 599 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 DHX36Q9H2U1 1008 aaKnown RBP12.16□□□□□ -0.46
CDH3-203ENST00000542274 ZFATQ9P243 1243 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 SRCAPQ6ZRS2 3230 aa12.16□□□□□ -0.46
CDH3-203ENST00000542274 QSER1Q2KHR3 1735 aa12.15□□□□□ -0.46
CDH3-203ENST00000542274 TBKBP1A7MCY6 615 aa12.15□□□□□ -0.46
CDH3-203ENST00000542274 BUB1BO60566 1050 aaPredicted RBP12.15□□□□□ -0.46
CDH3-203ENST00000542274 TMCC1O94876 653 aa12.15□□□□□ -0.46
CDH3-203ENST00000542274 PARNO95453 639 aaKnown RBP12.15□□□□□ -0.46
CDH3-203ENST00000542274 PFKFB1P16118 471 aa12.15□□□□□ -0.46
CDH3-203ENST00000542274 PTPAQ15257 358 aa12.15□□□□□ -0.46
CDH3-203ENST00000542274 WHAMMP3Q1A5X7 153 aa12.15□□□□□ -0.46
CDH3-203ENST00000542274 POTEEQ6S8J3 1075 aa12.15□□□□□ -0.46
CDH3-203ENST00000542274 DIS3L2Q8IYB7 885 aaKnown RBP12.15□□□□□ -0.46
CDH3-203ENST00000542274 CRACR2BQ8N4Y2 399 aaPredicted RBP12.15□□□□□ -0.46
CDH3-203ENST00000542274 ZSCAN10Q96SZ4 725 aaPredicted RBP12.15□□□□□ -0.46
CDH3-203ENST00000542274 MXD3Q9BW11 206 aa12.15□□□□□ -0.46
CDH3-203ENST00000542274 RNF41Q9H4P4 317 aaPredicted RBP12.15□□□□□ -0.46
CDH3-203ENST00000542274 VPS54Q9P1Q0 977 aa12.15□□□□□ -0.46
CDH3-203ENST00000542274 TMCC3Q9ULS5 477 aa12.15□□□□□ -0.46
CDH3-203ENST00000542274 H0YIN7 160 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 NDUFAB1O14561 156 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 SHOX2O60902 331 aaPredicted RBP12.15□□□□□ -0.47
CDH3-203ENST00000542274 PFDN1O60925 122 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 YEATS4O95619 227 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 LDHBP07195 334 aaKnown RBP12.15□□□□□ -0.47
CDH3-203ENST00000542274 BCRP11274 1271 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 NFKBIAP25963 317 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 TOB1P50616 345 aaPredicted RBP12.15□□□□□ -0.47
CDH3-203ENST00000542274 EARS2Q5JPH6 523 aaKnown RBP12.15□□□□□ -0.47
CDH3-203ENST00000542274 SHC4Q6S5L8 630 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 DPP8Q6V1X1 898 aaPredicted RBP12.15□□□□□ -0.47
CDH3-203ENST00000542274 LRRC49Q8IUZ0 686 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 KCNG4Q8TDN1 519 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 MAP3K14Q99558 947 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 ZNF304Q9HCX3 659 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 MRGBPQ9NV56 204 aa12.15□□□□□ -0.47
CDH3-203ENST00000542274 ADAMTS3O15072 1205 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 RNF40O75150 1001 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 ZNF202O95125 648 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 TRIM29Q14134 588 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 BRD3Q15059 726 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 ATL3Q6DD88 541 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 SLC44A5Q8NCS7 719 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 PPP1R14BQ96C90 147 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 INO80BQ9C086 356 aaPredicted RBP12.14□□□□□ -0.47
CDH3-203ENST00000542274 EBF2Q9HAK2 575 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 KCND1Q9NSA2 647 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 MCM9Q9NXL9 1143 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 CARD8Q9Y2G2 431 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 PDS5AQ29RF7 1337 aaKnown RBP12.14□□□□□ -0.47
CDH3-203ENST00000542274 TMEM232C9JQI7 657 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 F8W031 263 aaPredicted RBP12.14□□□□□ -0.47
CDH3-203ENST00000542274 WNT7AO00755 349 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 PENKP01210 267 aaPredicted RBP12.14□□□□□ -0.47
CDH3-203ENST00000542274 CLTAP09496 248 aa12.14□□□□□ -0.47
CDH3-203ENST00000542274 HSPA1AP0DMV8 641 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms