RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 EPN1Q9Y6I3 576 aaPredicted RBP15.36■□□□□ 0.05
USP3-204ENST00000540797 MYO1FO00160 1098 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 HOXA7P31268 230 aaPredicted RBP15.36■□□□□ 0.05
USP3-204ENST00000540797 MXI1P50539 228 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 MAP7D3Q8IWC1 876 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 GRK7Q8WTQ7 553 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 LRRN2O75325 713 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 MFSD14CQ5VZR4 134 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 RWDD2AQ9UIY3 292 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 SFI1A8K8P3 1242 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 PPP2R5CQ13362 524 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 MCPH1Q8NEM0 835 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 FAM20AQ96MK3 541 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 TMEM260Q9NX78 707 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 PPP2R2CQ9Y2T4 447 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 GOLGA8IPA6NC78 632 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 GOLGA8JA6NMD2 632 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 VIMP08670 466 aaKnown RBP15.35■□□□□ 0.05
USP3-204ENST00000540797 PLEKHA4Q9H4M7 779 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 POTEMA6NI47 508 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 IKBKBO14920 756 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 MTMR2Q13614 643 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 CCDC121Q6ZUS5 278 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 TRIM11Q96F44 468 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 GCNT4Q9P109 453 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 ZNF70Q9UC06 446 aaPredicted RBP15.35■□□□□ 0.05
USP3-204ENST00000540797 TYW5A2RUC4 315 aaKnown RBP15.35■□□□□ 0.05
USP3-204ENST00000540797 PSMD14O00487 310 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 SRGAP1Q7Z6B7 1085 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 ANKRD13CQ8N6S4 541 aa15.35■□□□□ 0.05
USP3-204ENST00000540797 UBE2TQ9NPD8 197 aaPredicted RBP15.35■□□□□ 0.05
USP3-204ENST00000540797 ZNF233A6NK53 670 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 MED7O43513 233 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 ADCY8P40145 1251 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 ZBED2Q9BTP6 218 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 ZNF302Q9NR11 478 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 BARHL2Q9NY43 387 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 NRXN1Q9ULB1 1477 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 KRT15P19012 456 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 ANGEL2Q5VTE6 544 aaKnown RBP15.34■□□□□ 0.05
USP3-204ENST00000540797 DSTYKQ6XUX3 929 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 THNSL1Q8IYQ7 743 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 CCDC110Q8TBZ0 833 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 RPGRIP1Q96KN7 1286 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 ATP8B3O60423 1300 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 ENTPD3O75355 529 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 RASSF7Q02833 373 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 BFSP1Q12934 665 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 MESDQ14696 234 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 PPP2R5EQ16537 467 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 KAZNQ674X7 775 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 RINT1Q6NUQ1 792 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 HHIPL2Q6UWX4 724 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 RUFY4Q6ZNE9 571 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 CTAGE3PQ8IX95 158 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 PALM2Q8IXS6 379 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 MXD3Q9BW11 206 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.34■□□□□ 0.05
USP3-204ENST00000540797 KIDINS220Q9ULH0 1771 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 FLT1P17948 1338 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 RIOK3O14730 519 aaKnown RBP15.34■□□□□ 0.05
USP3-204ENST00000540797 MTMR3Q13615 1198 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 DEFB132Q7Z7B7 95 aa15.34■□□□□ 0.05
USP3-204ENST00000540797 CD58P19256 250 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 CDC27P30260 824 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 VPS41P49754 854 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 CDC42EP5Q6NZY7 148 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 ZNF653Q96CK0 615 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 IFT122Q9HBG6 1241 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 LRRC4Q9HBW1 653 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 GOLGA8SH3BPF8 625 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 SFNP31947 248 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 GMPSP49915 693 aaPredicted RBP15.33■□□□□ 0.05
USP3-204ENST00000540797 PADI6Q6TGC4 694 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 LDHDQ86WU2 507 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 AFAP1L2Q8N4X5 818 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 THAP9Q9H5L6 903 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 GGA3Q9NZ52 723 aa15.33■□□□□ 0.05
USP3-204ENST00000540797 NCOA3Q9Y6Q9 1424 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 LDHAP00338 332 aaKnown RBP15.33■□□□□ 0.04
USP3-204ENST00000540797 PHKA2P46019 1235 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 C11orf57Q6ZUT1 292 aaPredicted RBP15.33■□□□□ 0.04
USP3-204ENST00000540797 ADAT2Q7Z6V5 191 aaKnown RBP15.33■□□□□ 0.04
USP3-204ENST00000540797 OXER1Q8TDS5 423 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 DYDC2Q96IM9 177 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 TNPO2O14787 897 aaKnown RBP15.33■□□□□ 0.04
USP3-204ENST00000540797 IGSF3O75054 1194 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 MAPK6Q16659 721 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 WHAMMP3Q1A5X7 153 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 HHATQ5VTY9 493 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 FYB2Q5VWT5 728 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 PPP4R3CPQ6ZMV5 832 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 RBM46Q8TBY0 533 aaKnown RBP15.33■□□□□ 0.04
USP3-204ENST00000540797 A0A087WWV3 80 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 SPDYE16A6NNV3 312 aaPredicted RBP15.33■□□□□ 0.04
USP3-204ENST00000540797 LRRC63Q05C16 580 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 SPDYE2Q495Y8 402 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 TDRD7Q8NHU6 1098 aaKnown RBP15.33■□□□□ 0.04
USP3-204ENST00000540797 KRT12Q99456 494 aa15.33■□□□□ 0.04
USP3-204ENST00000540797 ASB14A6NK59 587 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms