RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 ZNF365Q70YC5 407 aa17.16■□□□□ 0.34
UBE3B-212ENST00000540230 NIPA1Q7RTP0 329 aa17.16■□□□□ 0.34
UBE3B-212ENST00000540230 BLIDQ8IZY5 108 aa17.16■□□□□ 0.34
UBE3B-212ENST00000540230 DAGLBQ8NCG7 672 aa17.16■□□□□ 0.34
UBE3B-212ENST00000540230 NSUN7Q8NE18 718 aaKnown RBP17.16■□□□□ 0.34
UBE3B-212ENST00000540230 TET1Q8NFU7 2136 aa17.16■□□□□ 0.34
UBE3B-212ENST00000540230 SEPT1Q8WYJ6 367 aa17.16■□□□□ 0.34
UBE3B-212ENST00000540230 RNPC3Q96LT9 517 aaKnown RBP17.16■□□□□ 0.34
UBE3B-212ENST00000540230 PCYT2Q99447 389 aa17.16■□□□□ 0.34
UBE3B-212ENST00000540230 RNPEPQ9H4A4 650 aa17.16■□□□□ 0.34
UBE3B-212ENST00000540230 IL23AQ9NPF7 189 aa17.16■□□□□ 0.34
UBE3B-212ENST00000540230 ORC3Q9UBD5 711 aaPredicted RBP17.16■□□□□ 0.34
UBE3B-212ENST00000540230 SLC9A2Q9UBY0 812 aa17.16■□□□□ 0.34
UBE3B-212ENST00000540230 NFASCO94856 1347 aa17.15■□□□□ 0.34
UBE3B-212ENST00000540230 DDX39AO00148 427 aaKnown RBP17.15■□□□□ 0.34
UBE3B-212ENST00000540230 LENG9Q96B70 501 aa17.15■□□□□ 0.34
UBE3B-212ENST00000540230 PHF20Q9BVI0 1012 aa17.15■□□□□ 0.34
UBE3B-212ENST00000540230 PITPNM1O00562 1244 aa17.14■□□□□ 0.33
UBE3B-212ENST00000540230 DHX15O43143 795 aaKnown RBP17.14■□□□□ 0.33
UBE3B-212ENST00000540230 CCNE2O96020 404 aa17.14■□□□□ 0.33
UBE3B-212ENST00000540230 IQCF3P0C7M6 154 aa17.14■□□□□ 0.33
UBE3B-212ENST00000540230 MARK3P27448 753 aa17.14■□□□□ 0.33
UBE3B-212ENST00000540230 CIITAP33076 1130 aa17.14■□□□□ 0.33
UBE3B-212ENST00000540230 ACTR2P61160 394 aa17.14■□□□□ 0.33
UBE3B-212ENST00000540230 TRIM71Q2Q1W2 868 aaKnown RBP17.14■□□□□ 0.33
UBE3B-212ENST00000540230 PRR16Q569H4 304 aa17.14■□□□□ 0.33
UBE3B-212ENST00000540230 FAM109BQ6ICB4 259 aaPredicted RBP17.14■□□□□ 0.33
UBE3B-212ENST00000540230 TBCKQ8TEA7 893 aa17.14■□□□□ 0.33
UBE3B-212ENST00000540230 SDF4Q9BRK5 362 aa17.14■□□□□ 0.33
UBE3B-212ENST00000540230 SETD4Q9NVD3 440 aa17.14■□□□□ 0.33
UBE3B-212ENST00000540230 C17orf102A2RUQ5 167 aa17.13■□□□□ 0.33
UBE3B-212ENST00000540230 TREHO43280 583 aa17.13■□□□□ 0.33
UBE3B-212ENST00000540230 GPNMBQ14956 572 aa17.13■□□□□ 0.33
UBE3B-212ENST00000540230 DEFB128Q7Z7B8 93 aa17.13■□□□□ 0.33
UBE3B-212ENST00000540230 OXER1Q8TDS5 423 aa17.13■□□□□ 0.33
UBE3B-212ENST00000540230 CXXC1Q9P0U4 656 aaPredicted RBP17.13■□□□□ 0.33
UBE3B-212ENST00000540230 ZNF215Q9UL58 517 aaPredicted RBP17.13■□□□□ 0.33
UBE3B-212ENST00000540230 IPO5O00410 1097 aaKnown RBP17.12■□□□□ 0.33
UBE3B-212ENST00000540230 LGR5O75473 907 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 CKBP12277 381 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 RBL2Q08999 1139 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 PTK7Q13308 1070 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 BFSP2Q13515 415 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 RASIP1Q5U651 963 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 PSRC1Q6PGN9 363 aaPredicted RBP17.12■□□□□ 0.33
UBE3B-212ENST00000540230 TRAF7Q6Q0C0 670 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 Q7L0L9 218 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 OTOP2Q7RTS6 562 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 CCDC83Q8IWF9 413 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 CAGE1Q8TC20 777 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 ATP6V0A1Q93050 837 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 ZNF577Q9BSK1 485 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 LIMCH1Q9UPQ0 1083 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 EMSYQ7Z589 1322 aa17.12■□□□□ 0.33
UBE3B-212ENST00000540230 ATG7O95352 703 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 TDP2O95551 362 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 FOSBP53539 338 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 ADAM17P78536 824 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 SETQ01105 290 aaPredicted RBP17.11■□□□□ 0.33
UBE3B-212ENST00000540230 EARS2Q5JPH6 523 aaKnown RBP17.11■□□□□ 0.33
UBE3B-212ENST00000540230 GALNT17Q6IS24 598 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 SERINC5Q86VE9 423 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 FAM177A1Q8N128 213 aaPredicted RBP17.11■□□□□ 0.33
UBE3B-212ENST00000540230 RETREG2Q8NC44 543 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 AFAP1L1Q8TED9 768 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 LMBR1Q8WVP7 490 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 GLG1Q92896 1179 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 GJA10Q969M2 543 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 KAT6AQ92794 2004 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 FGBP02675 491 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 INF2Q27J81 1249 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 ZNF618Q5T7W0 954 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 LRRC8DQ7L1W4 858 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 HERVK_113Q902F9 699 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 ZBTB10Q96DT7 871 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 SMARCAD1Q9H4L7 1026 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 ERAP1Q9NZ08 941 aa17.11■□□□□ 0.33
UBE3B-212ENST00000540230 FAM205CA6NFA0 338 aa17.1■□□□□ 0.33
UBE3B-212ENST00000540230 GRXCR1A8MXD5 290 aa17.1■□□□□ 0.33
UBE3B-212ENST00000540230 MSH4O15457 936 aa17.1■□□□□ 0.33
UBE3B-212ENST00000540230 SELPP16109 830 aa17.1■□□□□ 0.33
UBE3B-212ENST00000540230 USP11P51784 963 aa17.1■□□□□ 0.33
UBE3B-212ENST00000540230 MBTPS1Q14703 1052 aa17.1■□□□□ 0.33
UBE3B-212ENST00000540230 NONOQ15233 471 aaKnown RBP eCLIP17.1■□□□□ 0.33
UBE3B-212ENST00000540230 ABHD15Q6UXT9 468 aa17.1■□□□□ 0.33
UBE3B-212ENST00000540230 CCDC60Q8IWA6 550 aaPredicted RBP17.1■□□□□ 0.33
UBE3B-212ENST00000540230 CCDC155Q8N6L0 562 aa17.1■□□□□ 0.33
UBE3B-212ENST00000540230 GBF1Q92538 1859 aa17.1■□□□□ 0.33
UBE3B-212ENST00000540230 WDR81Q562E7 1941 aa17.09■□□□□ 0.33
UBE3B-212ENST00000540230 COL6A3P12111 3177 aa17.09■□□□□ 0.33
UBE3B-212ENST00000540230 IGKV6D-21A0A0A0MT36 114 aa17.09■□□□□ 0.33
UBE3B-212ENST00000540230 NBNO60934 754 aa17.09■□□□□ 0.33
UBE3B-212ENST00000540230 XBP1P17861 261 aa17.09■□□□□ 0.33
UBE3B-212ENST00000540230 PPFIA1Q13136 1202 aa17.09■□□□□ 0.33
UBE3B-212ENST00000540230 NR5A1Q13285 461 aa17.09■□□□□ 0.33
UBE3B-212ENST00000540230 TCTN1Q2MV58 587 aa17.09■□□□□ 0.33
UBE3B-212ENST00000540230 KRT25Q7Z3Z0 450 aa17.09■□□□□ 0.33
UBE3B-212ENST00000540230 RPUSD2Q8IZ73 545 aaKnown RBP17.09■□□□□ 0.33
UBE3B-212ENST00000540230 OSBPL7Q9BZF2 842 aa17.09■□□□□ 0.33
UBE3B-212ENST00000540230 CD2BP2O95400 341 aaKnown RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms