RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 GPKOWQ92917 476 aaPredicted RBP eCLIP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 TMEM232C9JQI7 657 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 DTNBO60941 627 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 GCFC2P16383 781 aaKnown RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 HOXA7P31268 230 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 DHX9Q08211 1270 aaKnown RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 SLC12A1Q13621 1099 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 RYBPQ8N488 228 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 SSH3Q8TE77 659 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 LGR6Q9HBX8 967 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 RRP15Q9Y3B9 282 aaKnown RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 SLC39A14Q15043 492 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 TDRD7Q8NHU6 1098 aaKnown RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 CEP19Q96LK0 163 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 CLIC6Q96NY7 704 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 ACCSQ96QU6 501 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 WDR11Q9BZH6 1224 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 SNX25Q9H3E2 840 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 IKBKBO14920 756 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 KRT1P04264 644 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 CDC25BP30305 580 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 EIF3BP55884 814 aaKnown RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 KCTD2Q14681 263 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 E2F5Q15329 346 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 TTC19Q6DKK2 380 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 DNAJC24Q6P3W2 148 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 P2RX5Q93086 422 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 VPS39Q96JC1 886 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 POLR3CQ9BUI4 534 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 UBN1Q9NPG3 1134 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 CRB1P82279 1406 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 A0A0D9SFI3 127 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 CCDC151A5D8V7 595 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 IPO5O00410 1097 aaKnown RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 MED7O43513 233 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 BASP1P80723 227 aaKnown RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 NCAPG2Q86XI2 1143 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 NEK9Q8TD19 979 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 EDC3Q96F86 508 aaKnown RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 TBX22Q9Y458 520 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 MED23Q9ULK4 1368 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 NEO1Q92859 1461 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 HNRNPCL2B2RXH8 293 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 HNRNPCL1O60812 293 aaKnown RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 SYF2O95926 243 aaKnown RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 FGAP02671 866 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 MYL1P05976 194 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 GOLGA8HP0CJ92 632 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 CCNA1P78396 465 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 TAF11Q15544 211 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 C10orf76Q5T2E6 689 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 FOXP1Q9H334 677 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 OSBPL3Q9H4L5 887 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 NWD1Q149M9 1564 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 GOLGA8SH3BPF8 625 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 INO80B-WBP1J3KQ70 363 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 RASGRF2O14827 1237 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 PPP6R2O75170 966 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 TOM1L1O75674 476 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 ESRRAP11474 423 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 UBE3CQ15386 1083 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 NOP9Q86U38 636 aaKnown RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 LCA5Q86VQ0 697 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 CCDC24Q8N4L8 307 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 PPP1R13BQ96KQ4 1090 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 INO80BQ9C086 356 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 TMEM206Q9H813 350 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 LRRC4Q9HBW1 653 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 ENC1O14682 589 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 ZBTB22O15209 634 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 PPARGP37231 505 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 IGBP1P78318 339 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 DARS2Q6PI48 645 aaKnown RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 PDIK1LQ8N165 341 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 SDR42E1Q8WUS8 393 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 RNF26Q9BY78 433 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-209ENST00000537178 TECPR2O15040 1411 aa11.48□□□□□ -0.57
CLIP1-209ENST00000537178 EXOC1LA0A1B0GW35 172 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 KCNA6P17658 529 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 EIF4A1P60842 406 aaKnown RBP11.47□□□□□ -0.57
CLIP1-209ENST00000537178 ASPRV1Q53RT3 343 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 APOL6Q9BWW8 343 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 SCHIP1Q9P0W5 487 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-209ENST00000537178 NFKBIAP25963 317 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 ARHGDIAP52565 204 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 KIFC3Q9BVG8 833 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 CALN1Q9BXU9 219 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 LMCD1Q9NZU5 365 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 PYGBP11216 843 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 PDIA3P30101 505 aaKnown RBP11.47□□□□□ -0.57
CLIP1-209ENST00000537178 OCRLQ01968 901 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 PTH1RQ03431 593 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 CUL4AQ13619 759 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 ABCB5Q2M3G0 1257 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 KLC3Q6P597 504 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 GADL1Q6ZQY3 521 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 TRIM67Q6ZTA4 783 aa11.47□□□□□ -0.57
CLIP1-209ENST00000537178 EAF2Q96CJ1 260 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-209ENST00000537178 CHAMP1Q96JM3 812 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms