RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 MTUS1Q9ULD2 1270 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 PCDHA6Q9UN73 950 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 COG5Q9UP83 839 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 INSL6Q9Y581 213 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 PCDHA8Q9Y5H6 950 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 PRRC2BQ5JSZ5 2229 aaKnown RBP15.96■□□□□ 0.15
SYNE1-235ENST00000537033 LINC01553A4QN01 128 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 MAFGO15525 162 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 ZBTB43O43298 467 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 CDC45O75419 566 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 KCNA2P16389 499 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 NAPAP54920 295 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 FGD1P98174 961 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 COL9A3Q14050 684 aaPredicted RBP15.95■□□□□ 0.14
SYNE1-235ENST00000537033 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.95■□□□□ 0.14
SYNE1-235ENST00000537033 DHX32Q7L7V1 743 aaKnown RBP15.95■□□□□ 0.14
SYNE1-235ENST00000537033 TEX2Q8IWB9 1127 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 SEPT1Q8WYJ6 367 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 APBB2Q92870 758 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 GLG1Q92896 1179 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 ERAP1Q9NZ08 941 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 UBIAD1Q9Y5Z9 338 aa15.95■□□□□ 0.14
SYNE1-235ENST00000537033 CNTNAP5Q8WYK1 1306 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 GOLGA8AA7E2F4 631 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 GOLGA8BA8MQT2 603 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 hCG_1984214I3L0E3 225 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 ITGB5P18084 799 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 ERVK-21P61565 698 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 PPFIA1Q13136 1202 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 KRT40Q6A162 431 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 WWC2Q6AWC2 1192 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 TAF2Q6P1X5 1199 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 RSPH3Q86UC2 560 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 ZNF713Q8N859 430 aaPredicted RBP15.94■□□□□ 0.14
SYNE1-235ENST00000537033 GDPD5Q8WTR4 605 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 SMARCAD1Q9H4L7 1026 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 JADE2Q9NQC1 790 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 LMCD1Q9NZU5 365 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 TTC28Q96AY4 2481 aa15.94■□□□□ 0.14
SYNE1-235ENST00000537033 ATP9AO75110 1047 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 HMGB1P09429 215 aaKnown RBP15.93■□□□□ 0.14
SYNE1-235ENST00000537033 MARK3P27448 753 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 ADCY7P51828 1080 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 TFF2Q03403 129 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 SPRED2Q7Z698 418 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 TNPO1Q92973 898 aaKnown RBP15.93■□□□□ 0.14
SYNE1-235ENST00000537033 HLA-CQ95604 372 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 TCEANC2Q96MN5 208 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 YME1L1Q96TA2 773 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 SDF4Q9BRK5 362 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 IFIH1Q9BYX4 1025 aaKnown RBP15.93■□□□□ 0.14
SYNE1-235ENST00000537033 GLT8D2Q9H1C3 349 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 JPH1Q9HDC5 661 aaPredicted RBP15.93■□□□□ 0.14
SYNE1-235ENST00000537033 RIC8AQ9NPQ8 531 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 TUBE1Q9UJT0 475 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 NAP1L2Q9ULW6 460 aaPredicted RBP15.93■□□□□ 0.14
SYNE1-235ENST00000537033 TELO2Q9Y4R8 837 aa15.93■□□□□ 0.14
SYNE1-235ENST00000537033 SPTBN5Q9NRC6 3674 aaKnown RBP15.93■□□□□ 0.14
SYNE1-235ENST00000537033 KLF18A0A0U1RQI7 1052 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 LPXNO60711 386 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 FOSP01100 380 aaPredicted RBP15.92■□□□□ 0.14
SYNE1-235ENST00000537033 RPLP2P05387 115 aaKnown RBP15.92■□□□□ 0.14
SYNE1-235ENST00000537033 ADAM17P78536 824 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 EXOSC10Q01780 885 aaKnown RBP15.92■□□□□ 0.14
SYNE1-235ENST00000537033 MKRN4PQ13434 485 aaPredicted RBP15.92■□□□□ 0.14
SYNE1-235ENST00000537033 GRIK4Q16099 956 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 FAM26DQ5JW98 314 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 SKAP1Q86WV1 359 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 FBXO22Q8NEZ5 403 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 SAMD11Q96NU1 681 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 AZI2Q9H6S1 392 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 SUGCTQ9HAC7 445 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 SLC9A2Q9UBY0 812 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 TCF20Q9UGU0 1960 aaKnown RBP15.92■□□□□ 0.14
SYNE1-235ENST00000537033 NLRC5Q86WI3 1866 aa15.92■□□□□ 0.14
SYNE1-235ENST00000537033 GSTTP1A0A1W2PQM5 241 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 UPP2O95045 317 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 RCAN1P53805 252 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 HTRA4P83105 476 aaPredicted RBP15.91■□□□□ 0.14
SYNE1-235ENST00000537033 AP3B2Q13367 1082 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 TSGA10IPQ3SY00 556 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 RPAINQ86UA6 219 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 MXRA8Q9BRK3 442 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 ANO3Q9BYT9 981 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 KCNH7Q9NS40 1196 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 BRPF3Q9ULD4 1205 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 TRPC6Q9Y210 931 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 V9GY48 417 aaPredicted RBP15.91■□□□□ 0.14
SYNE1-235ENST00000537033 COL4A6Q14031 1691 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 RALGAPA2Q2PPJ7 1873 aa15.91■□□□□ 0.14
SYNE1-235ENST00000537033 CCDC196A0A1B0GTZ2 297 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 SMCO2A6NFE2 343 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 BMP1P13497 986 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 ZNF76P36508 570 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 KCNQ1P51787 676 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 ADCK5Q3MIX3 580 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 RUFY4Q6ZNE9 571 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 RASEFQ8IZ41 740 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 SP7Q8TDD2 431 aaPredicted RBP15.9■□□□□ 0.14
SYNE1-235ENST00000537033 TOP1MTQ969P6 601 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms