RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 TBX1O43435 398 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 CPP00450 1065 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 ZNF888P0CJ79 500 aaPredicted RBP4.32□□□□□ -1.72
SKA3-207ENST00000536239 RAC3P60763 192 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 GRIN1Q05586 938 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 SKIDA1Q1XH10 827 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 ZNF568Q3ZCX4 644 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 MAMDC4Q6UXC1 1216 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 PPIL6Q8IXY8 311 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 STPG3Q8N7X2 389 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 RASGRP4Q8TDF6 673 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 CLEC4DQ8WXI8 215 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 CCDC140Q96MF4 163 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 CRAMP1Q96RY5 1269 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 SLC6A20Q9NP91 592 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 PTPN22Q9Y2R2 807 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 SLC30A1Q9Y6M5 507 aa4.32□□□□□ -1.72
SKA3-207ENST00000536239 SLC27A2O14975 620 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 CR2P20023 1033 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 GLRBP48167 497 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 NCAPHQ15003 741 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 SF1Q15637 639 aaKnown RBP4.31□□□□□ -1.72
SKA3-207ENST00000536239 PRSS53Q2L4Q9 553 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 FNDC7Q5VTL7 733 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 ZNF654Q8IZM8 581 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 LARP4BQ92615 738 aaKnown RBP4.31□□□□□ -1.72
SKA3-207ENST00000536239 FAM89AQ96GI7 184 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 CARD11Q9BXL7 1154 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 CDIP1Q9H305 208 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 ARHGAP20Q9P2F6 1191 aa4.31□□□□□ -1.72
SKA3-207ENST00000536239 H0Y858 1186 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 ITGAVP06756 1048 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 ADH4P08319 380 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 ENO2P09104 434 aaPredicted RBP4.3□□□□□ -1.72
SKA3-207ENST00000536239 FAHP16930 419 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 ACRV1P26436 265 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 TUBA3CQ13748 450 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 RNF151Q2KHN1 245 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 DENND5AQ6IQ26 1287 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 TUBA3EQ6PEY2 450 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 AGAP2Q99490 1192 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 MMRN2Q9H8L6 949 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 OAZ3Q9UMX2 235 aa4.3□□□□□ -1.72
SKA3-207ENST00000536239 IL18BPO95998 194 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 KCNJ6P48051 423 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 PFKPQ01813 784 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 PAN2Q504Q3 1202 aaKnown RBP4.29□□□□□ -1.72
SKA3-207ENST00000536239 DPY19L2P1Q6NXN4 242 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 MRGPRGQ86SM5 289 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 ZNF227Q86WZ6 799 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 RBM12BQ8IXT5 1001 aaKnown RBP4.29□□□□□ -1.72
SKA3-207ENST00000536239 FAM169BQ8N8A8 192 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 PIP4K2CQ8TBX8 421 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 GPRASP2Q96D09 838 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 OR14A2Q96R54 314 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 JAM3Q9BX67 310 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 DMRT1Q9Y5R6 373 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 NPFFR2Q9Y5X5 522 aa4.29□□□□□ -1.72
SKA3-207ENST00000536239 CDC14BO60729 498 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 MAKP20794 623 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 POLD1P28340 1107 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 GFRA1P56159 465 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 DUSP8Q13202 625 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 CD276Q5ZPR3 534 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 PCSK4Q6UW60 755 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 ZNF808Q8N4W9 903 aaPredicted RBP4.28□□□□□ -1.72
SKA3-207ENST00000536239 TMEM145Q8NBT3 493 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 ZNF483Q8TF39 744 aaPredicted RBP4.28□□□□□ -1.72
SKA3-207ENST00000536239 CPLX3Q8WVH0 158 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 DPYSL5Q9BPU6 564 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 TACO1Q9BSH4 297 aaKnown RBP4.28□□□□□ -1.72
SKA3-207ENST00000536239 PDGFDQ9GZP0 370 aaPredicted RBP4.28□□□□□ -1.72
SKA3-207ENST00000536239 LRP2BPQ9P2M1 347 aa4.28□□□□□ -1.72
SKA3-207ENST00000536239 ZNF839A8K0R7 811 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 MATN2O00339 956 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 CUTAO60888 179 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 LTFP02788 710 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 NASPP49321 788 aaPredicted RBP4.27□□□□□ -1.73
SKA3-207ENST00000536239 TUSC3Q13454 348 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 NOLC1Q14978 699 aaKnown RBP eCLIP4.27□□□□□ -1.73
SKA3-207ENST00000536239 SV2CQ496J9 727 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 ZMAT1Q5H9K5 638 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 ZNF627Q7L945 461 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 VOPP1Q96AW1 172 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 C1orf159Q96HA4 380 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 PLA2G12BQ9BX93 195 aa4.27□□□□□ -1.73
SKA3-207ENST00000536239 ZNF703Q9H7S9 590 aaPredicted RBP4.27□□□□□ -1.73
SKA3-207ENST00000536239 PDIA4P13667 645 aaKnown RBP4.26□□□□□ -1.73
SKA3-207ENST00000536239 ZNF16P17020 682 aaPredicted RBP4.26□□□□□ -1.73
SKA3-207ENST00000536239 DNAJA1P31689 397 aaKnown RBP4.26□□□□□ -1.73
SKA3-207ENST00000536239 HIBADHP31937 336 aaKnown RBP4.26□□□□□ -1.73
SKA3-207ENST00000536239 RPS19P39019 145 aaKnown RBP4.26□□□□□ -1.73
SKA3-207ENST00000536239 FOXL1Q12952 345 aa4.26□□□□□ -1.73
SKA3-207ENST00000536239 TOP3AQ13472 1001 aaPredicted RBP4.26□□□□□ -1.73
SKA3-207ENST00000536239 SLC35F1Q5T1Q4 408 aa4.26□□□□□ -1.73
SKA3-207ENST00000536239 OTOP3Q7RTS5 596 aa4.26□□□□□ -1.73
SKA3-207ENST00000536239 SCUBE1Q8IWY4 988 aa4.26□□□□□ -1.73
SKA3-207ENST00000536239 C12orf65Q9H3J6 166 aaKnown RBP4.26□□□□□ -1.73
SKA3-207ENST00000536239 AURKAIP1Q9NWT8 199 aaPredicted RBP4.26□□□□□ -1.73
SKA3-207ENST00000536239 NR2E1Q9Y466 385 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms