RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 CICQ96RK0 1608 aaPredicted RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 A0A1W2PQH9 124 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 ERICH4A6NGS2 130 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 CHL1O00533 1208 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 MSTNO14793 375 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 SGSM2O43147 1006 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 DNAJA2O60884 412 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 EIF3JO75822 258 aaKnown RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 PHKG2P15735 406 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 POLR2BP30876 1174 aaKnown RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 SLC7A5Q01650 507 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 NCAPHQ15003 741 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 GNPTABQ3T906 1256 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 VHLLQ6RSH7 139 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 LEKR1Q6ZMV7 388 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 CCDC73Q6ZRK6 1079 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 DPH6Q7L8W6 267 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 LUZP1Q86V48 1076 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 CEP57L1Q8IYX8 460 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 CCAR2Q8N163 923 aaKnown RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 FAM169BQ8N8A8 192 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 ZCRB1Q8TBF4 217 aaKnown RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 BICD2Q8TD16 824 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 SMARCC1Q92922 1105 aaPredicted RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 SLC6A18Q96N87 628 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 SLC9A7Q96T83 725 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 MEIS3Q99687 375 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 METTL22Q9BUU2 404 aaPredicted RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 SSBP4Q9BWG4 385 aaPredicted RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 OSBPL1AQ9BXW6 950 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 FAM107BQ9H098 131 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 ASCC2Q9H1I8 757 aaPredicted RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 ALDH8A1Q9H2A2 487 aaPredicted RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 PRDM5Q9NQX1 630 aaPredicted RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 ST7Q9NRC1 585 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 TPSG1Q9NRR2 321 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 ZNF215Q9UL58 517 aaPredicted RBP7.54□□□□□ -1.2
USP28-202ENST00000535607 PALD1Q9ULE6 856 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 CEP131Q9UPN4 1083 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 SNX14Q9Y5W7 946 aa7.54□□□□□ -1.2
USP28-202ENST00000535607 PHLPP2Q6ZVD8 1323 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 SALL3Q9BXA9 1300 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 DOT1LQ8TEK3 1739 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 DYNC1LI2O43237 492 aaPredicted RBP7.53□□□□□ -1.2
USP28-202ENST00000535607 ZSCAN12O43309 604 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 CBFA2T2O43439 604 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 MYO1BO43795 1136 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 GLRX3O76003 335 aaKnown RBP7.53□□□□□ -1.2
USP28-202ENST00000535607 TUBBP07437 444 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 CASTP20810 708 aaKnown RBP7.53□□□□□ -1.2
USP28-202ENST00000535607 IFRD2Q12894 506 aaPredicted RBP7.53□□□□□ -1.2
USP28-202ENST00000535607 DOC2BQ14184 412 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 KRT32Q14532 448 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 DDB1Q16531 1140 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 CCDC158Q5M9N0 1113 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 CCDC30Q5VVM6 783 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 RNF43Q68DV7 783 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 ZAR1Q86SH2 424 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 CDH24Q86UP0 819 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 ERC1Q8IUD2 1116 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 CCDC144CPQ8IYA2 1237 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 GOLGA5Q8TBA6 731 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 DDX11Q96FC9 970 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 MFSD14AQ96MC6 490 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 ZNF396Q96N95 335 aaPredicted RBP7.53□□□□□ -1.2
USP28-202ENST00000535607 SRPK1Q96SB4 655 aaKnown RBP7.53□□□□□ -1.2
USP28-202ENST00000535607 L2HGDHQ9H9P8 463 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 PSD3Q9NYI0 1048 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.53□□□□□ -1.2
USP28-202ENST00000535607 KCNH3Q9ULD8 1083 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 UBR2Q8IWV8 1755 aa7.53□□□□□ -1.2
USP28-202ENST00000535607 NHSQ6T4R5 1651 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 CCDC69A6NI79 296 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 EFCAB8A8MWE9 144 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 ERVV-2B6SEH9 535 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 CYP27B1O15528 508 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 KINO60870 393 aaKnown RBP7.52□□□□□ -1.21
USP28-202ENST00000535607 UBTFL1P0CB47 393 aaPredicted RBP7.52□□□□□ -1.21
USP28-202ENST00000535607 H2AFXP16104 143 aaPredicted RBP7.52□□□□□ -1.21
USP28-202ENST00000535607 SFPQP23246 707 aaKnown RBP eCLIP7.52□□□□□ -1.21
USP28-202ENST00000535607 TEFQ10587 303 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 NFIAQ12857 509 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 TUBB2AQ13885 445 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 ELF2Q15723 593 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 DDR2Q16832 855 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 AXDND1Q5T1B0 1012 aaPredicted RBP7.52□□□□□ -1.21
USP28-202ENST00000535607 SFRP5Q5T4F7 317 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 GPAT2Q6NUI2 795 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 FBXO38Q6PIJ6 1188 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 SLC4A10Q6U841 1118 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 RUFY3Q7L099 469 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 HOMER1Q86YM7 354 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 CCDC83Q8IWF9 413 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 CACTINQ8WUQ7 758 aaKnown RBP7.52□□□□□ -1.21
USP28-202ENST00000535607 CHAMP1Q96JM3 812 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 DBNDD2Q9BQY9 259 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 TUBB2BQ9BVA1 445 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 DUSP23Q9BVJ7 150 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 ASPNQ9BXN1 380 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 HYPKQ9NX55 129 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms