RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 LETM2Q2VYF4 491 aa25.78■■□□□ 1.72
SFSWAP-204ENST00000535399 TUT1Q9H6E5 874 aaKnown RBP25.78■■□□□ 1.72
SFSWAP-204ENST00000535399 TRMT13Q9NUP7 481 aaKnown RBP25.78■■□□□ 1.72
SFSWAP-204ENST00000535399 MAGEA10P43363 369 aaPredicted RBP25.77■■□□□ 1.72
SFSWAP-204ENST00000535399 CUL4AQ13619 759 aa25.77■■□□□ 1.72
SFSWAP-204ENST00000535399 SAFBQ15424 915 aaKnown RBP eCLIP25.77■■□□□ 1.72
SFSWAP-204ENST00000535399 TBC1D22BQ9NU19 505 aa25.77■■□□□ 1.72
SFSWAP-204ENST00000535399 HDAC6Q9UBN7 1215 aa25.77■■□□□ 1.72
SFSWAP-204ENST00000535399 DDX39AO00148 427 aaKnown RBP25.76■■□□□ 1.71
SFSWAP-204ENST00000535399 LGR5O75473 907 aa25.76■■□□□ 1.71
SFSWAP-204ENST00000535399 ATG7O95352 703 aa25.76■■□□□ 1.71
SFSWAP-204ENST00000535399 GDF6Q6KF10 455 aaPredicted RBP25.76■■□□□ 1.71
SFSWAP-204ENST00000535399 PCYT2Q99447 389 aa25.76■■□□□ 1.71
SFSWAP-204ENST00000535399 GDF15Q99988 308 aa25.76■■□□□ 1.71
SFSWAP-204ENST00000535399 DDX25Q9UHL0 483 aaKnown RBP25.76■■□□□ 1.71
SFSWAP-204ENST00000535399 DOCK5Q9H7D0 1870 aa25.75■■□□□ 1.71
SFSWAP-204ENST00000535399 SLC37A4O43826 429 aa25.75■■□□□ 1.71
SFSWAP-204ENST00000535399 GCFC2P16383 781 aaKnown RBP25.75■■□□□ 1.71
SFSWAP-204ENST00000535399 GJB2P29033 226 aa25.75■■□□□ 1.71
SFSWAP-204ENST00000535399 PPP4R3AQ6IN85 833 aa25.75■■□□□ 1.71
SFSWAP-204ENST00000535399 C7orf31Q8N865 590 aa25.75■■□□□ 1.71
SFSWAP-204ENST00000535399 SLC5A5Q92911 643 aa25.75■■□□□ 1.71
SFSWAP-204ENST00000535399 PRO3102Q9H379 93 aa25.75■■□□□ 1.71
SFSWAP-204ENST00000535399 GTF2IRD1Q9UHL9 959 aa25.75■■□□□ 1.71
SFSWAP-204ENST00000535399 EMSYQ7Z589 1322 aa25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 SUPT20HL2P0C7V6 817 aa25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 MDM2Q00987 491 aaPredicted RBP25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 CHRDL2Q6WN34 429 aa25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 ETNPPLQ8TBG4 499 aa25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 GJA10Q969M2 543 aa25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 CTAGE1Q96RT6 745 aa25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 RIT2Q99578 217 aa25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 ZNF215Q9UL58 517 aaPredicted RBP25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 KIF3AQ9Y496 699 aa25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.74■■□□□ 1.71
SFSWAP-204ENST00000535399 TIMP1P01033 207 aa25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 CYP2C9P11712 490 aa25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 RAG1P15918 1043 aa25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 HIC1Q14526 733 aa25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 ZNF746Q6NUN9 644 aaPredicted RBP25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 ABHD15Q6UXT9 468 aa25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 BADQ92934 168 aa25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 NAP1L4Q99733 375 aaKnown RBP25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 LBHD1Q9BQE6 289 aaPredicted RBP25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 FOXP1Q9H334 677 aaPredicted RBP25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 SMARCAD1Q9H4L7 1026 aa25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 SMC3Q9UQE7 1217 aa25.73■■□□□ 1.71
SFSWAP-204ENST00000535399 IGKV6D-21A0A0A0MT36 114 aa25.72■■□□□ 1.71
SFSWAP-204ENST00000535399 CCNT1O60563 726 aaKnown RBP25.72■■□□□ 1.71
SFSWAP-204ENST00000535399 SMIM10L2AP0DMW4 78 aa25.72■■□□□ 1.71
SFSWAP-204ENST00000535399 SMIM10L2BP0DMW5 78 aa25.72■■□□□ 1.71
SFSWAP-204ENST00000535399 HOXC8P31273 242 aa25.72■■□□□ 1.71
SFSWAP-204ENST00000535399 KRT76Q01546 638 aa25.72■■□□□ 1.71
SFSWAP-204ENST00000535399 GLG1Q92896 1179 aa25.72■■□□□ 1.71
SFSWAP-204ENST00000535399 SNX21Q969T3 373 aa25.72■■□□□ 1.71
SFSWAP-204ENST00000535399 NOC4LQ9BVI4 516 aaKnown RBP25.72■■□□□ 1.71
SFSWAP-204ENST00000535399 RNPEPQ9H4A4 650 aa25.72■■□□□ 1.71
SFSWAP-204ENST00000535399 WNT7AO00755 349 aa25.71■■□□□ 1.71
SFSWAP-204ENST00000535399 PSMD10O75832 226 aa25.71■■□□□ 1.71
SFSWAP-204ENST00000535399 ZNF200P98182 395 aaPredicted RBP25.71■■□□□ 1.71
SFSWAP-204ENST00000535399 PTGISQ16647 500 aa25.71■■□□□ 1.71
SFSWAP-204ENST00000535399 LRCH2Q5VUJ6 765 aa25.71■■□□□ 1.71
SFSWAP-204ENST00000535399 HIPK3Q9H422 1215 aa25.71■■□□□ 1.71
SFSWAP-204ENST00000535399 KCNMB3Q9NPA1 279 aa25.71■■□□□ 1.71
SFSWAP-204ENST00000535399 ERAP1Q9NZ08 941 aa25.71■■□□□ 1.71
SFSWAP-204ENST00000535399 COLQQ9Y215 455 aaPredicted RBP25.71■■□□□ 1.71
SFSWAP-204ENST00000535399 KIF28PB7ZC32 967 aa25.7■■□□□ 1.7
SFSWAP-204ENST00000535399 K7ELQ4 463 aaPredicted RBP25.7■■□□□ 1.7
SFSWAP-204ENST00000535399 GAS7O60861 476 aa25.7■■□□□ 1.7
SFSWAP-204ENST00000535399 MARK3P27448 753 aa25.7■■□□□ 1.7
SFSWAP-204ENST00000535399 BMP8BP34820 402 aa25.7■■□□□ 1.7
SFSWAP-204ENST00000535399 MIS18BP1Q6P0N0 1132 aa25.7■■□□□ 1.7
SFSWAP-204ENST00000535399 PLPPR4Q7Z2D5 763 aa25.7■■□□□ 1.7
SFSWAP-204ENST00000535399 TEKT3Q9BXF9 490 aa25.7■■□□□ 1.7
SFSWAP-204ENST00000535399 PPP1R12CQ9BZL4 782 aa25.7■■□□□ 1.7
SFSWAP-204ENST00000535399 AZI2Q9H6S1 392 aa25.7■■□□□ 1.7
SFSWAP-204ENST00000535399 RANBP2P49792 3224 aaKnown RBP25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 UMODL1Q5DID0 1318 aa25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 CYP2C18P33260 490 aa25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 STAT5BP51692 787 aa25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 B3GNT9Q6UX72 402 aa25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 CCDC60Q8IWA6 550 aaPredicted RBP25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 SMAP1Q8IYB5 467 aaPredicted RBP25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 AFAP1L1Q8TED9 768 aa25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 FAM20AQ96MK3 541 aa25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 UNC45AQ9H3U1 944 aa25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 TCEAL9Q9UHQ7 104 aa25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 NOD1Q9Y239 953 aa25.69■■□□□ 1.7
SFSWAP-204ENST00000535399 C17orf102A2RUQ5 167 aa25.68■■□□□ 1.7
SFSWAP-204ENST00000535399 U2AF2P26368 475 aaKnown RBP eCLIP25.68■■□□□ 1.78e-9■■■■■ 29.5
SFSWAP-204ENST00000535399 MFSD5Q6N075 450 aa25.68■■□□□ 1.7
SFSWAP-204ENST00000535399 POTEDQ86YR6 584 aa25.68■■□□□ 1.7
SFSWAP-204ENST00000535399 NOSTRINQ8IVI9 506 aa25.68■■□□□ 1.7
SFSWAP-204ENST00000535399 DHX38Q92620 1227 aaKnown RBP25.68■■□□□ 1.7
SFSWAP-204ENST00000535399 HAS1Q92839 578 aa25.68■■□□□ 1.7
SFSWAP-204ENST00000535399 PCDHA10Q9Y5I2 948 aa25.68■■□□□ 1.7
SFSWAP-204ENST00000535399 WDR64B1ANS9 1081 aa25.67■■□□□ 1.7
SFSWAP-204ENST00000535399 BACH1O14867 736 aa25.67■■□□□ 1.7
SFSWAP-204ENST00000535399 TBX3O15119 743 aa25.67■■□□□ 1.7
SFSWAP-204ENST00000535399 SWSAP1Q6NVH7 229 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms