RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.29□□□□□ -1.56
USP48-215ENST00000534705 SRPK1Q96SB4 655 aaKnown RBP5.29□□□□□ -1.56
USP48-215ENST00000534705 NGRNQ9NPE2 291 aaKnown RBP5.29□□□□□ -1.56
USP48-215ENST00000534705 PRDM2Q13029 1718 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 FAM221BA6H8Z2 402 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 CCDC85CA6NKD9 419 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 C22orf46C9J442 243 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 GPR42O15529 346 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 DIAPH1O60610 1272 aaKnown RBP5.28□□□□□ -1.56
USP48-215ENST00000534705 NTRK1P04629 796 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 CYP1A1P04798 512 aaPredicted RBP5.28□□□□□ -1.56
USP48-215ENST00000534705 BCL6P41182 706 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 EPHB4P54760 987 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 PPP2CBP62714 309 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 PPP2CAP67775 309 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 NTRK3Q16288 839 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 EMC4Q5J8M3 183 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 CD300LDQ6UXZ3 194 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 ARHGEF18Q6ZSZ5 1173 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 USP53Q70EK8 1073 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 TEX2Q8IWB9 1127 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 TRMT2BQ96GJ1 504 aaKnown RBP5.28□□□□□ -1.56
USP48-215ENST00000534705 TMEM169Q96HH4 297 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 DNAJC2Q99543 621 aaKnown RBP5.28□□□□□ -1.56
USP48-215ENST00000534705 PHF20Q9BVI0 1012 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 ZNF341Q9BYN7 854 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 PFDN2Q9UHV9 154 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 ING1Q9UK53 422 aaPredicted RBP5.28□□□□□ -1.56
USP48-215ENST00000534705 ZNF652Q9Y2D9 606 aa5.28□□□□□ -1.56
USP48-215ENST00000534705 COA3Q9Y2R0 106 aaPredicted RBP5.28□□□□□ -1.56
USP48-215ENST00000534705 WDR33Q9C0J8 1336 aaKnown RBP5.27□□□□□ -1.57
USP48-215ENST00000534705 TRBV23-1A0A0A0MS06 115 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 LCP1P13796 627 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 FPR2P25090 351 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 GPR85P60893 370 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 FHL2Q14192 279 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 KIZQ2M2Z5 673 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 YOD1Q5VVQ6 348 aaPredicted RBP5.27□□□□□ -1.57
USP48-215ENST00000534705 CYP4F22Q6NT55 531 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 CEP68Q76N32 757 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 MAMDC2Q7Z304 686 aaPredicted RBP5.27□□□□□ -1.57
USP48-215ENST00000534705 MIB1Q86YT6 1006 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 PMFBP1Q8TBY8 1022 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 THAP3Q8WTV1 239 aaPredicted RBP5.27□□□□□ -1.57
USP48-215ENST00000534705 CDC6Q99741 560 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 CDIP1Q9H305 208 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 EPB41L1Q9H4G0 881 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 JADE2Q9NQC1 790 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 FBXL7Q9UJT9 491 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 PCDHA2Q9Y5H9 948 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 KIF21AQ7Z4S6 1674 aa5.27□□□□□ -1.57
USP48-215ENST00000534705 KDM2BQ8NHM5 1336 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 CCDC163A0A0D9SF12 145 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 ITGA1P56199 1179 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 INHBEP58166 350 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 R3HDM1Q15032 1099 aaKnown RBP5.26□□□□□ -1.57
USP48-215ENST00000534705 C2orf27AQ580R0 203 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 PRAMEF18Q5VWM3 479 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 SLFN13Q68D06 897 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 LBX2Q6XYB7 198 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 IFNL3Q8IZI9 196 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 ZSWIM2Q8NEG5 633 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 IGDCC4Q8TDY8 1250 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 IPO9Q96P70 1041 aaKnown RBP5.26□□□□□ -1.57
USP48-215ENST00000534705 WDR26Q9H7D7 661 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 BTG4Q9NY30 223 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 CLDND1Q9NY35 253 aa5.26□□□□□ -1.57
USP48-215ENST00000534705 BAZ1BQ9UIG0 1483 aaKnown RBP5.26□□□□□ -1.57
USP48-215ENST00000534705 PATE3B3GLJ2 98 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 AQP7O14520 342 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 SGSM2O43147 1006 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 ZNF623O75123 536 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 CYP7B1O75881 506 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 FAM153BP0C7A2 387 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 NAT1P18440 290 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 HS1BP3Q53T59 392 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 SPDYAQ5MJ70 313 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 ZNF575Q86XF7 245 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 PHOSPHO1Q8TCT1 267 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 PTPRN2Q92932 1015 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 EXOC2Q96KP1 924 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 DNAJC7Q99615 494 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 DHRS4Q9BTZ2 278 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 TMEM168Q9H0V1 697 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 L2HGDHQ9H9P8 463 aa5.25□□□□□ -1.57
USP48-215ENST00000534705 CDK11AQ9UQ88 783 aaPredicted RBP5.25□□□□□ -1.57
USP48-215ENST00000534705 MAFKO60675 156 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 MSCO60682 206 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 DGKIO75912 1065 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 C6orf222P0C671 652 aaPredicted RBP5.24□□□□□ -1.57
USP48-215ENST00000534705 ZNF28P17035 718 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 GRK2P25098 689 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 GRK3P35626 688 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 GABREP78334 506 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 FOXB2Q5VYV0 432 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 PKN3Q6P5Z2 889 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 STK32CQ86UX6 486 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 FAM126BQ8IXS8 530 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.24□□□□□ -1.57
USP48-215ENST00000534705 MRFAP1L1Q96HT8 127 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms