RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 AP3B2Q13367 1082 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 TRIM71Q2Q1W2 868 aaKnown RBP11.92□□□□□ -0.5
CAPN1-225ENST00000533704 CNKSR3Q6P9H4 555 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 TMCO2Q7Z6W1 182 aaPredicted RBP11.92□□□□□ -0.5
CAPN1-225ENST00000533704 SERINC5Q86VE9 423 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 PPM1EQ8WY54 764 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 SEPT1Q8WYJ6 367 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 UIMC1Q96RL1 719 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 MXRA8Q9BRK3 442 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 SDF4Q9BRK5 362 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 GLT8D2Q9H1C3 349 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 C6orf50Q9HD87 102 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 JPH1Q9HDC5 661 aaPredicted RBP11.92□□□□□ -0.5
CAPN1-225ENST00000533704 KCNH7Q9NS40 1196 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 PCDHA11Q9Y5I1 949 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 EVPLQ92817 2033 aa11.92□□□□□ -0.5
CAPN1-225ENST00000533704 CUL9Q8IWT3 2517 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 SIP14410 1827 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 GSTTP1A0A1W2PQM5 241 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 RSPH10B2B2RC85 870 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 DDX39AO00148 427 aaKnown RBP11.91□□□□□ -0.5
CAPN1-225ENST00000533704 PRPF3O43395 683 aaKnown RBP11.91□□□□□ -0.5
CAPN1-225ENST00000533704 BAIAP3O94812 1187 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 PARNO95453 639 aaKnown RBP11.91□□□□□ -0.5
CAPN1-225ENST00000533704 CENPBP07199 599 aaPredicted RBP11.91□□□□□ -0.5
CAPN1-225ENST00000533704 RSPH10BP0C881 870 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 PDIA3P30101 505 aaKnown RBP11.91□□□□□ -0.5
CAPN1-225ENST00000533704 WDR5P61964 334 aaKnown RBP11.91□□□□□ -0.5
CAPN1-225ENST00000533704 RBL2Q08999 1139 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 STK3Q13188 491 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 GPNMBQ14956 572 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 TCTN1Q2MV58 587 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 FAM117BQ6P1L5 589 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 HERC6Q8IVU3 1022 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.91□□□□□ -0.5
CAPN1-225ENST00000533704 CCDC12Q8WUD4 166 aaPredicted RBP11.91□□□□□ -0.5
CAPN1-225ENST00000533704 LMBR1Q8WVP7 490 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 ZBED2Q9BTP6 218 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 AGXT2Q9BYV1 514 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 CERS4Q9HA82 394 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 ZSWIM6Q9HCJ5 1215 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 SLC9A2Q9UBY0 812 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 NID2Q14112 1375 aa11.91□□□□□ -0.5
CAPN1-225ENST00000533704 KIF28PB7ZC32 967 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 CPLX1O14810 134 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 ADAMTS3O15072 1205 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 MAFGO15525 162 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 TLL1O43897 1013 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 LGR5O75473 907 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 CXCL10P02778 98 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 CA3P07451 260 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 SREBF1P36956 1147 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 IGBP1P78318 339 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 DEFB103AP81534 67 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 PPFIA1Q13136 1202 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 TOB2Q14106 344 aaPredicted RBP11.9□□□□□ -0.5
CAPN1-225ENST00000533704 MBTPS1Q14703 1052 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 PKN1Q16512 942 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 CEP55Q53EZ4 464 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 TRAF7Q6Q0C0 670 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 PLA2G4DQ86XP0 818 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 REXO1Q8N1G1 1221 aaKnown RBP11.9□□□□□ -0.5
CAPN1-225ENST00000533704 MICALL1Q8N3F8 863 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 PHOSPHO2Q8TCD6 241 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 RASGRP4Q8TDF6 673 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 SMARCAD1Q9H4L7 1026 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 AZI2Q9H6S1 392 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 AGO4Q9HCK5 861 aaKnown RBP11.9□□□□□ -0.5
CAPN1-225ENST00000533704 PDRG1Q9NUG6 133 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 ERAP1Q9NZ08 941 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 VPS54Q9P1Q0 977 aa11.9□□□□□ -0.5
CAPN1-225ENST00000533704 PRRC2BQ5JSZ5 2229 aaKnown RBP11.9□□□□□ -0.51
CAPN1-225ENST00000533704 EMSYQ7Z589 1322 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 ESYT2A0FGR8 921 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 DLL1O00548 723 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 EPB41L2O43491 1005 aaKnown RBP11.89□□□□□ -0.51
CAPN1-225ENST00000533704 IFNAR1P17181 557 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 GNA11P29992 359 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 HOXC8P31273 242 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 CLK2P49760 499 aaKnown RBP11.89□□□□□ -0.51
CAPN1-225ENST00000533704 ACTR2P61160 394 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 SSRP1Q08945 709 aaKnown RBP11.89□□□□□ -0.51
CAPN1-225ENST00000533704 ITGB3BPQ13352 177 aaPredicted RBP11.89□□□□□ -0.51
CAPN1-225ENST00000533704 IKBKEQ14164 716 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 CCDC85BQ15834 202 aaPredicted RBP11.89□□□□□ -0.51
CAPN1-225ENST00000533704 GRIK4Q16099 956 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 NTRK3Q16288 839 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 ERICH6BQ5W0A0 696 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 TEX2Q8IWB9 1127 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 TRIM22Q8IYM9 498 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 FBXL16Q8N461 479 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 CCDC148Q8NFR7 591 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 DBF4BQ8NFT6 615 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 RNF26Q9BY78 433 aaPredicted RBP11.89□□□□□ -0.51
CAPN1-225ENST00000533704 ZMYND12Q9H0C1 365 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 TRPC6Q9Y210 931 aa11.89□□□□□ -0.51
CAPN1-225ENST00000533704 NFASCO94856 1347 aa11.88□□□□□ -0.51
CAPN1-225ENST00000533704 NRCAMQ92823 1304 aa11.88□□□□□ -0.51
CAPN1-225ENST00000533704 COL4A4P53420 1690 aaPredicted RBP11.88□□□□□ -0.51
CAPN1-225ENST00000533704 ABHD14A-ACY1A0A1B0GW23 586 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms