RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 PTH1RQ03431 593 aa18.13■□□□□ 0.49
CHMP4A-207ENST00000533523 NEDD9Q14511 834 aa18.13■□□□□ 0.49
CHMP4A-207ENST00000533523 SART3Q15020 963 aaKnown RBP18.13■□□□□ 0.49
CHMP4A-207ENST00000533523 UTP14CQ5TAP6 766 aaKnown RBP18.13■□□□□ 0.49
CHMP4A-207ENST00000533523 CASC1Q6TDU7 716 aa18.13■□□□□ 0.49
CHMP4A-207ENST00000533523 METTL7BQ6UX53 244 aa18.13■□□□□ 0.49
CHMP4A-207ENST00000533523 SAMD11Q96NU1 681 aa18.13■□□□□ 0.49
CHMP4A-207ENST00000533523 IFIH1Q9BYX4 1025 aaKnown RBP18.13■□□□□ 0.49
CHMP4A-207ENST00000533523 RNPEPQ9H4A4 650 aa18.13■□□□□ 0.49
CHMP4A-207ENST00000533523 SETD4Q9NVD3 440 aa18.13■□□□□ 0.49
CHMP4A-207ENST00000533523 POTEB3A0JP26 581 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 FIBPO43427 364 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 CYP21A2P08686 494 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 GNAT1P11488 350 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 ARHGAP4P98171 946 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 SEMA3FQ13275 785 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 PTCRAQ6ISU1 281 aaPredicted RBP18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 POTEBQ6S5H4 581 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 EP400NLQ6ZTU2 488 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 MAP4K1Q92918 833 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 INPP4AQ96PE3 977 aaPredicted RBP18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 GPR20Q99678 358 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 ESYT1Q9BSJ8 1104 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 USP26Q9BXU7 913 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 OSBPL7Q9BZF2 842 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 RTEL1Q9NZ71 1219 aa18.12■□□□□ 0.49
CHMP4A-207ENST00000533523 TTC3P53804 2025 aa18.11■□□□□ 0.49
CHMP4A-207ENST00000533523 H3BQ06 376 aaPredicted RBP18.11■□□□□ 0.49
CHMP4A-207ENST00000533523 STAM2O75886 525 aa18.11■□□□□ 0.49
CHMP4A-207ENST00000533523 GPM6BQ13491 265 aa18.11■□□□□ 0.49
CHMP4A-207ENST00000533523 CATIPQ7Z7H3 387 aa18.11■□□□□ 0.49
CHMP4A-207ENST00000533523 LMBR1Q8WVP7 490 aa18.11■□□□□ 0.49
CHMP4A-207ENST00000533523 ZFHX2Q9C0A1 2572 aaPredicted RBP18.11■□□□□ 0.49
CHMP4A-207ENST00000533523 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 GRXCR2A6NFK2 248 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 ICAM3P32942 547 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 TCEAL5Q5H9L2 206 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 TMEM192Q8IY95 271 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 NCOA7Q8NI08 942 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 SMARCC2Q8TAQ2 1214 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 NEK9Q8TD19 979 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 APBB2Q92870 758 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 CUL5Q93034 780 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 TOP1MTQ969P6 601 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 BACH2Q9BYV9 841 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 TELO2Q9Y4R8 837 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 RBM8AQ9Y5S9 174 aaKnown RBP18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 TAF6LQ9Y6J9 622 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 ZDBF2Q9HCK1 2354 aa18.1■□□□□ 0.49
CHMP4A-207ENST00000533523 CACNA1HO95180 2353 aa18.09■□□□□ 0.49
CHMP4A-207ENST00000533523 SPATA31C2B4DYI2 1134 aa18.09■□□□□ 0.49
CHMP4A-207ENST00000533523 H3BNC9 293 aa18.09■□□□□ 0.49
CHMP4A-207ENST00000533523 CTNNB1P35222 781 aa18.09■□□□□ 0.49
CHMP4A-207ENST00000533523 TROAPQ12815 778 aa18.09■□□□□ 0.49
CHMP4A-207ENST00000533523 HFE2Q6ZVN8 426 aa18.09■□□□□ 0.49
CHMP4A-207ENST00000533523 BANK1Q8NDB2 785 aa18.09■□□□□ 0.49
CHMP4A-207ENST00000533523 E7EWF7 191 aa18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 GHRP10912 638 aa18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 PCNX4Q63HM2 1172 aa18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 USP17L6PQ6QN14 398 aa18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 RRP36Q96EU6 259 aaKnown RBP18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 UIMC1Q96RL1 719 aa18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 MYL10Q9BUA6 226 aa18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 LSG1Q9H089 658 aaKnown RBP18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 NSUN3Q9H649 340 aaKnown RBP18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 ANO2Q9NQ90 1003 aa18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 SEC63Q9UGP8 760 aaKnown RBP18.08■□□□□ 0.48
CHMP4A-207ENST00000533523 CSPG5O95196 566 aa18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 ANTXR2P58335 489 aa18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 ZP2Q05996 745 aa18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 COL19A1Q14993 1142 aa18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 PUS10Q3MIT2 529 aaKnown RBP18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 RUFY4Q6ZNE9 571 aa18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 NLRX1Q86UT6 975 aa18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 CTCFLQ8NI51 663 aaPredicted RBP18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 PABPC5Q96DU9 382 aaKnown RBP18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 SPZ1Q9BXG8 430 aa18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 ALG13Q9NP73 1137 aaKnown RBP18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 DMXL1Q9Y485 3027 aa18.07■□□□□ 0.48
CHMP4A-207ENST00000533523 ADGRA3Q8IWK6 1321 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 NRCAMQ92823 1304 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 PLXNA3P51805 1871 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 C19orf67A6NJJ6 358 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 MARK3P27448 753 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 TCF7P36402 384 aaPredicted RBP18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 PPFIA1Q13136 1202 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 FAM26DQ5JW98 314 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 ZNF654Q8IZM8 581 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 FIBCD1Q8N539 461 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 PRSS33Q8NF86 280 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 IL17RAQ96F46 866 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 SENP7Q9BQF6 1050 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 CLDND1Q9NY35 253 aa18.06■□□□□ 0.48
CHMP4A-207ENST00000533523 DCXO43602 365 aa18.05■□□□□ 0.48
CHMP4A-207ENST00000533523 DDAH1O94760 285 aa18.05■□□□□ 0.48
CHMP4A-207ENST00000533523 CHRNA1P02708 482 aa18.05■□□□□ 0.48
CHMP4A-207ENST00000533523 KIF5BP33176 963 aa18.05■□□□□ 0.48
CHMP4A-207ENST00000533523 ADAM17P78536 824 aa18.05■□□□□ 0.48
CHMP4A-207ENST00000533523 RNF20Q5VTR2 975 aa18.05■□□□□ 0.48
CHMP4A-207ENST00000533523 XRRA1Q6P2D8 792 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms