RNA–Protein interactions for RNA: ENST00000527299.1

CLNS1A-209, Transcript of chloride nucleotide-sensitive channel 1A, human

TSL 2

Gene CLNS1A, Length 387 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLNS1A-209	ENST00000527299	NRN1L	Q496H8	165 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	USP39	Q53GS9	565 aa	Known RBP	4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	IQCE	Q6IPM2	695 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	OTUD6B	Q8N6M0	293 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NUDT10	Q8NFP7	164 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NPLOC4	Q8TAT6	608 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NUDT11	Q96G61	164 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TRMT2B	Q96GJ1	504 aa	Known RBP	4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TRIM8	Q9BZR9	551 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CYP26B1	Q9NR63	512 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TERF2IP	Q9NYB0	399 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	HSPBP1	Q9NZL4	362 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	APEX2	Q9UBZ4	518 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	SLC4A7	Q9Y6M7	1214 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	UNC13A	Q9UPW8	1703 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NINL	Q9Y2I6	1382 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	RNF123	Q5XPI4	1314 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ANKRD34B	A5PLL1	514 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	PLEKHD1	A6NEE1	506 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	PLSCR1	O15162	318 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ZNF500	O60304	480 aa	Predicted RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	FRAT2	O75474	233 aa	Predicted RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	MCM7	P33993	719 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	BCL6	P41182	706 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	SSR1	P43307	286 aa	Known RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NANOS3	P60323	173 aa	Known RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	PTH1R	Q03431	593 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	COL9A2	Q14055	689 aa	Predicted RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ZKSCAN8	Q15776	578 aa	Predicted RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	EMC4	Q5J8M3	183 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NBPF6	Q5VWK0	638 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CTR9	Q6PD62	1173 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	POMZP3	Q6PJE2	187 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CCDC81	Q6ZN84	652 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299		Q6ZUG5	572 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	RALYL	Q86SE5	291 aa	Known RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NBPF5P	Q86XG9	351 aa	Predicted RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	BVES	Q8NE79	360 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TMEM169	Q96HH4	297 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NBPF4	Q96M43	638 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CRBN	Q96SW2	442 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	MYCBP	Q99417	103 aa	Predicted RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CGN	Q9P2M7	1197 aa	Known RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ZFR2	Q9UPR6	939 aa	Known RBP	4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CEP83	Q9Y592	693 aa		4.53	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ARNTL	O00327	626 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	GIPR	P48546	466 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	AGBL4	Q5VU57	503 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	E4F1	Q66K89	784 aa	Predicted RBP	4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	CCDC103	Q8IW40	242 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	TMEM87A	Q8NBN3	555 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	EXTL1	Q92935	676 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	AJUBA	Q96IF1	538 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	LMF1	Q96S06	567 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	NCAPG	Q9BPX3	1015 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	NKX2-4	Q9H2Z4	354 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	WDR26	Q9H7D7	661 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	KIF3A	Q9Y496	699 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	PCDHB4	Q9Y5E5	795 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	TNFRSF18	Q9Y5U5	241 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	PCSK5	Q92824	1860 aa		4.52	□□□□□ -1.69
CLNS1A-209	ENST00000527299	VIRMA	Q69YN4	1812 aa	Known RBP	4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	BAZ1B	Q9UIG0	1483 aa	Known RBP	4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	GOLIM4	O00461	696 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	ANP32C	O43423	234 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	KIF1C	O43896	1103 aa	Known RBP	4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	CCDC172	P0C7W6	258 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	COMT	P21964	271 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	KCNJ4	P48050	445 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	MFAP1	P55081	439 aa	Known RBP	4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	GABPB1	Q06547	395 aa	Predicted RBP	4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	HNRNPA0	Q13151	305 aa	Known RBP	4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	CCDC27	Q2M243	656 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	LSM12	Q3MHD2	195 aa	Known RBP	4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	ZNF394	Q53GI3	561 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	HSP90AB4P	Q58FF6	505 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	STEAP3	Q658P3	488 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	GTF2IRD2B	Q6EKJ0	949 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	KIAA1211L	Q6NV74	962 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	TMC5	Q6UXY8	1006 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	GTF2IRD2	Q86UP8	949 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	PROSER1	Q86XN7	944 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	TRIM59	Q8IWR1	403 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	OR6P1	Q8NGX9	317 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	MKL1	Q969V6	931 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	MRGPRX3	Q96LB0	322 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	TIGD1	Q96MW7	591 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	CSRNP2	Q9H175	543 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	MYH16	Q9H6N6	1097 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	POGK	Q9P215	609 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	TMEFF2	Q9UIK5	374 aa	Predicted RBP	4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	FBXL7	Q9UJT9	491 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	COA3	Q9Y2R0	106 aa	Predicted RBP	4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	SMARCA2	P51531	1590 aa		4.51	□□□□□ -1.69
CLNS1A-209	ENST00000527299	RAD50	Q92878	1312 aa		4.5	□□□□□ -1.69
CLNS1A-209	ENST00000527299	KIF16B	Q96L93	1317 aa		4.5	□□□□□ -1.69
CLNS1A-209	ENST00000527299		A0A087X1B8	175 aa		4.5	□□□□□ -1.69
CLNS1A-209	ENST00000527299	UQCRHL	A0A096LP55	91 aa		4.5	□□□□□ -1.69
CLNS1A-209	ENST00000527299		H7BY64	318 aa		4.5	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms