RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 POTEMA6NI47 508 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 IPO5O00410 1097 aaKnown RBP21.11■□□□□ 0.97
VPS28-207ENST00000526977 SLC26A4O43511 780 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 PLCG1P19174 1290 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 LRCH2Q5VUJ6 765 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 CALML4Q96GE6 196 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 CDHR1Q96JP9 859 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 INPP4AQ96PE3 977 aaPredicted RBP21.11■□□□□ 0.97
VPS28-207ENST00000526977 CUEDC2Q9H467 287 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 SPTLC3Q9NUV7 552 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 CPA4Q9UI42 421 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 SOWAHBA6NEL2 793 aa21.1■□□□□ 0.97
VPS28-207ENST00000526977 PSMD10O75832 226 aa21.1■□□□□ 0.97
VPS28-207ENST00000526977 GNPTABQ3T906 1256 aa21.1■□□□□ 0.97
VPS28-207ENST00000526977 C17orf99Q6UX52 265 aa21.1■□□□□ 0.97
VPS28-207ENST00000526977 OTOP1Q7RTM1 612 aa21.1■□□□□ 0.97
VPS28-207ENST00000526977 CAPNS2Q96L46 248 aa21.1■□□□□ 0.97
VPS28-207ENST00000526977 RMND1Q9NWS8 449 aa21.1■□□□□ 0.97
VPS28-207ENST00000526977 CBFA2T2O43439 604 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 GAS7O60861 476 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 PGK2P07205 417 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 EDNRBP24530 442 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 SPIRE1Q08AE8 756 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 HSP90AA4PQ58FG1 418 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 SPATA1Q5VX52 437 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 KLHL10Q6JEL2 608 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 ERMNQ8TAM6 284 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 ZIC5Q96T25 663 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 AGO4Q9HCK5 861 aaKnown RBP21.09■□□□□ 0.97
VPS28-207ENST00000526977 SAMSN1Q9NSI8 373 aaKnown RBP21.09■□□□□ 0.97
VPS28-207ENST00000526977 TBC1D22BQ9NU19 505 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 ASTN1O14525 1302 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 CA12O43570 354 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 MYL1P05976 194 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 PPP2R5CQ13362 524 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 ZNF658Q5TYW1 1059 aaPredicted RBP21.09■□□□□ 0.97
VPS28-207ENST00000526977 TMC6Q7Z403 805 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 GPR142Q7Z601 462 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 UIMC1Q96RL1 719 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 VAV3Q9UKW4 847 aa21.09■□□□□ 0.97
VPS28-207ENST00000526977 CDK11BP21127 795 aaKnown RBP21.08■□□□□ 0.97
VPS28-207ENST00000526977 STX17P56962 302 aa21.08■□□□□ 0.97
VPS28-207ENST00000526977 HAUS3Q68CZ6 603 aa21.08■□□□□ 0.97
VPS28-207ENST00000526977 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.08■□□□□ 0.97
VPS28-207ENST00000526977 PLEKHH3Q7Z736 793 aa21.08■□□□□ 0.97
VPS28-207ENST00000526977 SNX29Q8TEQ0 813 aa21.08■□□□□ 0.97
VPS28-207ENST00000526977 TEKT3Q9BXF9 490 aa21.08■□□□□ 0.97
VPS28-207ENST00000526977 MAGEF1Q9HAY2 307 aa21.08■□□□□ 0.97
VPS28-207ENST00000526977 KLRC4O43908 158 aa21.07■□□□□ 0.96
VPS28-207ENST00000526977 GSDMDP57764 484 aa21.07■□□□□ 0.96
VPS28-207ENST00000526977 PDE4DQ08499 809 aa21.07■□□□□ 0.96
VPS28-207ENST00000526977 ADORA2AP29274 412 aa21.07■□□□□ 0.96
VPS28-207ENST00000526977 CRHR2Q13324 411 aa21.07■□□□□ 0.96
VPS28-207ENST00000526977 KCNB1Q14721 858 aa21.07■□□□□ 0.96
VPS28-207ENST00000526977 CDK5RAP3Q96JB5 506 aa21.07■□□□□ 0.96
VPS28-207ENST00000526977 NT5C3AQ9H0P0 336 aa21.07■□□□□ 0.96
VPS28-207ENST00000526977 KDM3AQ9Y4C1 1321 aa21.07■□□□□ 0.96
VPS28-207ENST00000526977 ASB14A6NK59 587 aa21.06■□□□□ 0.96
VPS28-207ENST00000526977 RGS20O76081 388 aa21.06■□□□□ 0.96
VPS28-207ENST00000526977 GRB10Q13322 594 aa21.06■□□□□ 0.96
VPS28-207ENST00000526977 NCAPH2Q6IBW4 605 aa21.06■□□□□ 0.96
VPS28-207ENST00000526977 INTS13Q9NVM9 706 aa21.06■□□□□ 0.96
VPS28-207ENST00000526977 DHX15O43143 795 aaKnown RBP21.05■□□□□ 0.96
VPS28-207ENST00000526977 ICAM3P32942 547 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 GRB14Q14449 540 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 ZNF792Q3KQV3 632 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 KMT5BQ4FZB7 885 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 HYIQ5T013 277 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 B3GNT9Q6UX72 402 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 MORC4Q8TE76 937 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 FGD4Q96M96 766 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 PNMA5Q96PV4 448 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 C7orf25Q9BPX7 421 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 DIS3Q9Y2L1 958 aaKnown RBP21.05■□□□□ 0.96
VPS28-207ENST00000526977 SYNRGQ9UMZ2 1314 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 SLC15A5A6NIM6 579 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 SPATA31C2B4DYI2 1134 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 CCT6AP40227 531 aaKnown RBP21.05■□□□□ 0.96
VPS28-207ENST00000526977 SEMA3FQ13275 785 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 ZNF467Q7Z7K2 595 aaPredicted RBP21.05■□□□□ 0.96
VPS28-207ENST00000526977 VSTM4Q8IW00 320 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 KCTD17Q8N5Z5 321 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 NUDT12Q9BQG2 462 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 SLC5A4Q9NY91 659 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 GDAQ9Y2T3 454 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 LCTP09848 1927 aa21.05■□□□□ 0.96
VPS28-207ENST00000526977 AOC2O75106 756 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 RPA1P27694 616 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 PRCPP42785 496 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 ITGB3BPQ13352 177 aaPredicted RBP21.04■□□□□ 0.96
VPS28-207ENST00000526977 CDKAL1Q5VV42 579 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 ARMCX5Q6P1M9 558 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 DPP9Q86TI2 863 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 TRIM9Q9C026 710 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 STK17AQ9UEE5 414 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 RWDD2AQ9UIY3 292 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 CTNND2Q9UQB3 1225 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 RHOBTB3O94955 611 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 TGFB3P10600 412 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 SKILP12757 684 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms