RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 ERAP1Q9NZ08 941 aa23.49■■□□□ 1.35
VPS28-206ENST00000526734 SLC4A7Q9Y6M7 1214 aa23.49■■□□□ 1.35
VPS28-206ENST00000526734 GSTTP1A0A1W2PQM5 241 aa23.48■■□□□ 1.35
VPS28-206ENST00000526734 BAIAP3O94812 1187 aa23.48■■□□□ 1.35
VPS28-206ENST00000526734 GALNT17Q6IS24 598 aa23.48■■□□□ 1.35
VPS28-206ENST00000526734 TRIM50Q86XT4 487 aa23.48■■□□□ 1.35
VPS28-206ENST00000526734 FTOQ9C0B1 505 aaKnown RBP eCLIP23.48■■□□□ 1.351e-6■■□□□ 11.8
VPS28-206ENST00000526734 SLKQ9H2G2 1235 aaPredicted RBP23.48■■□□□ 1.35
VPS28-206ENST00000526734 AGO4Q9HCK5 861 aaKnown RBP23.48■■□□□ 1.35
VPS28-206ENST00000526734 PKD2L1Q9P0L9 805 aa23.48■■□□□ 1.35
VPS28-206ENST00000526734 CXXC1Q9P0U4 656 aaPredicted RBP23.48■■□□□ 1.35
VPS28-206ENST00000526734 VPS54Q9P1Q0 977 aa23.48■■□□□ 1.35
VPS28-206ENST00000526734 NRCAMQ92823 1304 aa23.48■■□□□ 1.35
VPS28-206ENST00000526734 ZBBXA8MT70 800 aa23.47■■□□□ 1.35
VPS28-206ENST00000526734 NLRP5P59047 1200 aa23.47■■□□□ 1.35
VPS28-206ENST00000526734 STK3Q13188 491 aa23.47■■□□□ 1.35
VPS28-206ENST00000526734 PLA2G4DQ86XP0 818 aa23.47■■□□□ 1.35
VPS28-206ENST00000526734 GLG1Q92896 1179 aa23.47■■□□□ 1.35
VPS28-206ENST00000526734 TIFAQ96CG3 184 aa23.47■■□□□ 1.35
VPS28-206ENST00000526734 SEMA6BQ9H3T3 888 aa23.47■■□□□ 1.35
VPS28-206ENST00000526734 RNPEPQ9H4A4 650 aa23.47■■□□□ 1.35
VPS28-206ENST00000526734 AZI2Q9H6S1 392 aa23.47■■□□□ 1.35
VPS28-206ENST00000526734 MSRAQ9UJ68 235 aa23.47■■□□□ 1.35
VPS28-206ENST00000526734 PFKFB2O60825 505 aa23.46■■□□□ 1.35
VPS28-206ENST00000526734 LGR5O75473 907 aa23.46■■□□□ 1.35
VPS28-206ENST00000526734 CXCL10P02778 98 aa23.46■■□□□ 1.35
VPS28-206ENST00000526734 ARP10275 920 aa23.46■■□□□ 1.35
VPS28-206ENST00000526734 CYP2W1Q8TAV3 490 aa23.46■■□□□ 1.35
VPS28-206ENST00000526734 PHOSPHO2Q8TCD6 241 aa23.46■■□□□ 1.35
VPS28-206ENST00000526734 SLC9A7Q96T83 725 aa23.46■■□□□ 1.35
VPS28-206ENST00000526734 STK36Q9NRP7 1315 aa23.46■■□□□ 1.35
VPS28-206ENST00000526734 SZT2Q5T011 3432 aa23.46■■□□□ 1.35
VPS28-206ENST00000526734 IGLV3-22A0A075B6J6 115 aa23.45■■□□□ 1.34
VPS28-206ENST00000526734 EFCAB14O75071 495 aa23.45■■□□□ 1.34
VPS28-206ENST00000526734 RPLP2P05387 115 aaKnown RBP23.45■■□□□ 1.34
VPS28-206ENST00000526734 CIITAP33076 1130 aa23.45■■□□□ 1.34
VPS28-206ENST00000526734 ZNF200P98182 395 aaPredicted RBP23.45■■□□□ 1.34
VPS28-206ENST00000526734 HIC1Q14526 733 aa23.45■■□□□ 1.34
VPS28-206ENST00000526734 DAGLBQ8NCG7 672 aa23.45■■□□□ 1.34
VPS28-206ENST00000526734 PBX4Q9BYU1 374 aa23.45■■□□□ 1.34
VPS28-206ENST00000526734 TCEAL9Q9UHQ7 104 aa23.45■■□□□ 1.34
VPS28-206ENST00000526734 PCDHA4Q9UN74 947 aa23.45■■□□□ 1.34
VPS28-206ENST00000526734 FAM86B1E9PN63 330 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 FAM86B2P0C5J1 330 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 ATP2A2P16615 1042 aaKnown RBP23.44■■□□□ 1.34
VPS28-206ENST00000526734 XBP1P17861 261 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 SLC26A2P50443 739 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 AK2P54819 239 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 ACTR2P61160 394 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 ADAM17P78536 824 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 SCRN1Q12765 414 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 ITGB3BPQ13352 177 aaPredicted RBP23.44■■□□□ 1.34
VPS28-206ENST00000526734 ZNF618Q5T7W0 954 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 TAF2Q6P1X5 1199 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 CNKSR3Q6P9H4 555 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 PLPPR4Q7Z2D5 763 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 LMBR1Q8WVP7 490 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 GUCD1Q96NT3 240 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 LARP6Q9BRS8 491 aaKnown RBP23.44■■□□□ 1.34
VPS28-206ENST00000526734 TTYH1Q9H313 450 aaPredicted RBP23.44■■□□□ 1.34
VPS28-206ENST00000526734 TBC1D22BQ9NU19 505 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 SETD4Q9NVD3 440 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 TPCN1Q9ULQ1 816 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 TELO2Q9Y4R8 837 aa23.44■■□□□ 1.34
VPS28-206ENST00000526734 IPO5O00410 1097 aaKnown RBP23.43■■□□□ 1.34
VPS28-206ENST00000526734 TREHO43280 583 aa23.43■■□□□ 1.34
VPS28-206ENST00000526734 PPFIA3O75145 1194 aa23.43■■□□□ 1.34
VPS28-206ENST00000526734 THPOP40225 353 aa23.43■■□□□ 1.34
VPS28-206ENST00000526734 USP11P51784 963 aa23.43■■□□□ 1.34
VPS28-206ENST00000526734 PPFIA1Q13136 1202 aa23.43■■□□□ 1.34
VPS28-206ENST00000526734 TRAF7Q6Q0C0 670 aa23.43■■□□□ 1.34
VPS28-206ENST00000526734 RPAINQ86UA6 219 aa23.43■■□□□ 1.34
VPS28-206ENST00000526734 WNT8BQ93098 351 aa23.43■■□□□ 1.34
VPS28-206ENST00000526734 PCDHA11Q9Y5I1 949 aa23.43■■□□□ 1.34
VPS28-206ENST00000526734 DOCK5Q9H7D0 1870 aa23.43■■□□□ 1.34
VPS28-206ENST00000526734 RRN3P2A6NIE6 340 aa23.42■■□□□ 1.34
VPS28-206ENST00000526734 RSPH10B2B2RC85 870 aa23.42■■□□□ 1.34
VPS28-206ENST00000526734 ATG7O95352 703 aa23.42■■□□□ 1.34
VPS28-206ENST00000526734 RSPH10BP0C881 870 aa23.42■■□□□ 1.34
VPS28-206ENST00000526734 RASGRP4Q8TDF6 673 aa23.42■■□□□ 1.34
VPS28-206ENST00000526734 WASF1Q92558 559 aa23.42■■□□□ 1.34
VPS28-206ENST00000526734 FAM161BQ96MY7 647 aa23.42■■□□□ 1.34
VPS28-206ENST00000526734 ZNF577Q9BSK1 485 aa23.42■■□□□ 1.34
VPS28-206ENST00000526734 ABHD14A-ACY1A0A1B0GW23 586 aa23.41■■□□□ 1.34
VPS28-206ENST00000526734 GRXCR1A8MXD5 290 aa23.41■■□□□ 1.34
VPS28-206ENST00000526734 NBNO60934 754 aa23.41■■□□□ 1.34
VPS28-206ENST00000526734 KCNJ6P48051 423 aa23.41■■□□□ 1.34
VPS28-206ENST00000526734 GPNMBQ14956 572 aa23.41■■□□□ 1.34
VPS28-206ENST00000526734 FAM160B1Q5W0V3 765 aa23.41■■□□□ 1.34
VPS28-206ENST00000526734 RSPH3Q86UC2 560 aa23.41■■□□□ 1.34
VPS28-206ENST00000526734 BLIDQ8IZY5 108 aa23.41■■□□□ 1.34
VPS28-206ENST00000526734 ZNF576Q9H609 170 aa23.41■■□□□ 1.34
VPS28-206ENST00000526734 MBLAC1A4D2B0 266 aaPredicted RBP23.4■■□□□ 1.34
VPS28-206ENST00000526734 MARK3P27448 753 aa23.4■■□□□ 1.34
VPS28-206ENST00000526734 STAT5BP51692 787 aa23.4■■□□□ 1.34
VPS28-206ENST00000526734 KRT76Q01546 638 aa23.4■■□□□ 1.34
VPS28-206ENST00000526734 GRIK4Q16099 956 aa23.4■■□□□ 1.34
VPS28-206ENST00000526734 ZNF746Q6NUN9 644 aaPredicted RBP23.4■■□□□ 1.34
VPS28-206ENST00000526734 MIS18BP1Q6P0N0 1132 aa23.4■■□□□ 1.34
VPS28-206ENST00000526734 SMAP1Q8IYB5 467 aaPredicted RBP23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms