RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PTRH1Q86Y79 214 aaKnown RBP6.13□□□□□ -1.43
CD44-217ENST00000525348 TRIM48Q8IWZ4 208 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 NCOA5Q9HCD5 579 aaKnown RBP6.13□□□□□ -1.43
CD44-217ENST00000525348 SMURF1Q9HCE7 757 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 TRIM39Q9HCM9 518 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 RTEL1Q9NZ71 1219 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 SFMBT1Q9UHJ3 866 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 SRPK3Q9UPE1 567 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 CCDC66A2RUB6 948 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 FAM90A27PA6NNH2 459 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 ZNF561-AS1K7EIQ3 104 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 DDX3XO00571 662 aaKnown RBP eCLIP6.12□□□□□ -1.43
CD44-217ENST00000525348 KCNK3O14649 394 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 ZNF28P17035 718 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 KCNA6P17658 529 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 MLLT6P55198 1093 aaPredicted RBP6.12□□□□□ -1.43
CD44-217ENST00000525348 FSTL4Q6MZW2 842 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 ABHD17CQ6PCB6 329 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 C16orf59Q7L2K0 433 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 DTX3Q8N9I9 347 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 SH3TC2Q8TF17 1288 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 ZCCHC14Q8WYQ9 949 aaKnown RBP6.12□□□□□ -1.43
CD44-217ENST00000525348 MRFAP1L1Q96HT8 127 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 CLUHP3Q96NS8 147 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 MRPL4Q9BYD3 311 aaKnown RBP6.12□□□□□ -1.43
CD44-217ENST00000525348 CATSPERZQ9NTU4 200 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 DUSP10Q9Y6W6 482 aa6.12□□□□□ -1.43
CD44-217ENST00000525348 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.11□□□□□ -1.43
CD44-217ENST00000525348 KCNQ2O43526 872 aa6.11□□□□□ -1.43
CD44-217ENST00000525348 PRICKLE3O43900 615 aaPredicted RBP6.11□□□□□ -1.43
CD44-217ENST00000525348 RAPGEF3O95398 923 aa6.11□□□□□ -1.43
CD44-217ENST00000525348 COL6A1P12109 1028 aa6.11□□□□□ -1.43
CD44-217ENST00000525348 KRT15P19012 456 aa6.11□□□□□ -1.43
CD44-217ENST00000525348 DNM2P50570 870 aa6.11□□□□□ -1.43
CD44-217ENST00000525348 CD276Q5ZPR3 534 aa6.11□□□□□ -1.43
CD44-217ENST00000525348 ZC3H7AQ8IWR0 971 aaKnown RBP6.11□□□□□ -1.43
CD44-217ENST00000525348 CISD2Q8N5K1 135 aaKnown RBP6.11□□□□□ -1.43
CD44-217ENST00000525348 TMEM209Q96SK2 561 aa6.11□□□□□ -1.43
CD44-217ENST00000525348 CROTQ9UKG9 612 aa6.11□□□□□ -1.43
CD44-217ENST00000525348 COQ6Q9Y2Z9 468 aa6.11□□□□□ -1.43
CD44-217ENST00000525348 CCDC163A0A0D9SF12 145 aa6.1□□□□□ -1.43
CD44-217ENST00000525348 TCRBV16S1A1N1A0A5B0 115 aa6.1□□□□□ -1.43
CD44-217ENST00000525348 EFCAB14O75071 495 aa6.1□□□□□ -1.43
CD44-217ENST00000525348 SEC23AQ15436 765 aa6.1□□□□□ -1.43
CD44-217ENST00000525348 TM4SF20Q53R12 229 aa6.1□□□□□ -1.43
CD44-217ENST00000525348 MCTP2Q6DN12 878 aa6.1□□□□□ -1.43
CD44-217ENST00000525348 FRMD5Q7Z6J6 570 aa6.1□□□□□ -1.43
CD44-217ENST00000525348 TXNDC5Q8NBS9 432 aaKnown RBP6.1□□□□□ -1.43
CD44-217ENST00000525348 CLIC6Q96NY7 704 aa6.1□□□□□ -1.43
CD44-217ENST00000525348 ZNF839A8K0R7 811 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 PTPN1P18031 435 aaKnown RBP6.09□□□□□ -1.43
CD44-217ENST00000525348 NAT1P18440 290 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 IL13P35225 146 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 LACTBP83111 547 aaPredicted RBP6.09□□□□□ -1.43
CD44-217ENST00000525348 NFIXQ14938 502 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 RGL3Q3MIN7 710 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 FIGNQ5HY92 759 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 BTBD8Q5XKL5 378 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 VASNQ6EMK4 673 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 DDX1Q92499 740 aaKnown RBP6.09□□□□□ -1.43
CD44-217ENST00000525348 MAGEB10Q96LZ2 347 aaPredicted RBP6.09□□□□□ -1.43
CD44-217ENST00000525348 YTHDC1Q96MU7 727 aaKnown RBP6.09□□□□□ -1.43
CD44-217ENST00000525348 TEPSINQ96N21 525 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 DLL4Q9NR61 685 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 NUB1Q9Y5A7 615 aa6.09□□□□□ -1.43
CD44-217ENST00000525348 PLD2O14939 933 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 PPP1R12AO14974 1030 aaPredicted RBP6.08□□□□□ -1.44
CD44-217ENST00000525348 IL18BPO95998 194 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 GJA9P57773 515 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 ST5P78524 1137 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 PFKPQ01813 784 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 CRY1Q16526 586 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 SKIDA1Q1XH10 827 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 FAM47CQ5HY64 1035 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 FAM26FQ5R3K3 315 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 PRAMEF18Q5VWM3 479 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 OVCH1Q7RTY7 1134 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 FERMT3Q86UX7 667 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 RELTQ969Z4 430 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 MBD6Q96DN6 1003 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 RNPC3Q96LT9 517 aaKnown RBP6.08□□□□□ -1.44
CD44-217ENST00000525348 SLC39A2Q9NP94 309 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 USP40Q9NVE5 1235 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 RIC8BQ9NVN3 520 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 TMEM260Q9NX78 707 aa6.08□□□□□ -1.44
CD44-217ENST00000525348 ESYT3A0FGR9 886 aa6.07□□□□□ -1.44
CD44-217ENST00000525348 FOXD2O60548 495 aaPredicted RBP6.07□□□□□ -1.44
CD44-217ENST00000525348 DNAJC8O75937 253 aaPredicted RBP6.07□□□□□ -1.44
CD44-217ENST00000525348 C4BPAP04003 597 aaKnown RBP6.07□□□□□ -1.44
CD44-217ENST00000525348 CNR2P34972 360 aa6.07□□□□□ -1.44
CD44-217ENST00000525348 GLRBP48167 497 aa6.07□□□□□ -1.44
CD44-217ENST00000525348 DBPQ10586 325 aaPredicted RBP6.07□□□□□ -1.44
CD44-217ENST00000525348 CPZQ66K79 652 aa6.07□□□□□ -1.44
CD44-217ENST00000525348 HHIPL2Q6UWX4 724 aa6.07□□□□□ -1.44
CD44-217ENST00000525348 NOSTRINQ8IVI9 506 aa6.07□□□□□ -1.44
CD44-217ENST00000525348 IGSF22Q8N9C0 903 aa6.07□□□□□ -1.44
CD44-217ENST00000525348 CELF4Q9BZC1 486 aaKnown RBP6.07□□□□□ -1.44
CD44-217ENST00000525348 ZFP69BQ9UJL9 534 aa6.07□□□□□ -1.44
CD44-217ENST00000525348 ATP23Q9Y6H3 246 aa6.07□□□□□ -1.44
CD44-217ENST00000525348 ZNF460Q14592 562 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms