RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 DYNLL1P63167 89 aaKnown RBP11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 TNIP1Q15025 636 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 PNMA3Q9UL41 463 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 NAT2P11245 290 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 PLCG1P19174 1290 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 TXKP42681 527 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 SLC8A3P57103 927 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 IFI35P80217 286 aaPredicted RBP11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 P2RX5Q93086 422 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 FERMT2Q96AC1 680 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 KRT23Q9C075 422 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 BATF3Q9NR55 127 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 SNX24Q9Y343 169 aa11.01□□□□□ -0.65
PDGFRB-207ENST00000520579 A2ML1A8K2U0 1454 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 LSM1O15116 133 aaKnown RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 SRGNP10124 158 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 UBE4AQ14139 1066 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 CDC37Q16543 378 aaPredicted RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 RFX8Q6ZV50 586 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 TTC30AQ86WT1 665 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 RBM41Q96IZ5 413 aaKnown RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 CDK5RAP3Q96JB5 506 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 OSBPL1AQ9BXW6 950 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 TMBIM4Q9HC24 238 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 SUN2Q9UH99 717 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 TBK1Q9UHD2 729 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 FAM208AQ9UK61 1670 aaKnown RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 VCAM1P19320 739 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 CWF19L1Q69YN2 538 aaKnown RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 SPATS2Q86XZ4 545 aaKnown RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 MFN1Q8IWA4 741 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 CCDC65Q8IXS2 484 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 ZNF579Q8NAF0 562 aaKnown RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 ECT2Q9H8V3 914 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 INTS9Q9NV88 658 aaKnown RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 INTUQ9ULD6 942 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 AGAP1Q9UPQ3 857 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 CCT8L1PA6NM43 557 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 VPS41P49754 854 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 ALDH5A1P51649 535 aaPredicted RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 KLHL30Q0D2K2 578 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 PDXDC2PQ6P474 469 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 ZNF449Q6P9G9 518 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 CCDC50Q8IVM0 306 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 SPATA20Q8TB22 786 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 BUD13Q9BRD0 619 aaKnown RBP eCLIP11□□□□□ -0.65
PDGFRB-207ENST00000520579 DDX23Q9BUQ8 820 aaKnown RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 NDST4Q9H3R1 872 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 TAF1DQ9H5J8 278 aaPredicted RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 PIDD1Q9HB75 910 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 TRMT112Q9UI30 125 aaKnown RBP11□□□□□ -0.65
PDGFRB-207ENST00000520579 ANKARQ7Z5J8 1434 aa11□□□□□ -0.65
PDGFRB-207ENST00000520579 H7C1W4 665 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 SART1O43290 800 aaKnown RBP10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 IGBP1P78318 339 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 UAP1Q16222 522 aaPredicted RBP10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 UBAP2Q5T6F2 1119 aaKnown RBP10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 SH3RF1Q7Z6J0 888 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 CXorf38Q8TB03 319 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 GLG1Q92896 1179 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 DUSP9Q99956 384 aaKnown RBP10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 ATP6V0A4Q9HBG4 840 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 SWAP70Q9UH65 585 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 PTPN22Q9Y2R2 807 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 SEMA3EO15041 775 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 ACTN1P12814 892 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 CCDC80Q76M96 950 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 CHMP6Q96FZ7 201 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 FGFR1OP2Q9NVK5 253 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 ASAP1Q9ULH1 1129 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 WTIPA6NIX2 430 aaPredicted RBP10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 GSG1L2A8MUP6 293 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 TRAPPC3O43617 180 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 FGFR4P22455 802 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 CLCN2P51788 898 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 RUFY4Q6ZNE9 571 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 ELOA2Q8IYF1 753 aaPredicted RBP10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 OGFOD1Q8N543 542 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 ZNF570Q96NI8 536 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 XPO6Q96QU8 1125 aaKnown RBP10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 MMTAG2Q9BU76 263 aaKnown RBP10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 NOP53Q9NZM5 478 aaKnown RBP10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 C15orf41Q9Y2V0 281 aa10.99□□□□□ -0.65
PDGFRB-207ENST00000520579 RGS16O15492 202 aaPredicted RBP10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 EIF4BP23588 611 aaKnown RBP10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 EEF1GP26641 437 aaKnown RBP10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 CTCFP49711 727 aaPredicted RBP10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 ZNF507Q8TCN5 953 aa10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 ESR2Q92731 530 aa10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 DISC1Q9NRI5 854 aa10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 SETD1AO15047 1707 aaKnown RBP10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 A0A087X0T9 212 aa10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 AHCYL1O43865 530 aa10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 PCCAP05165 728 aaPredicted RBP10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 FAM228BP0C875 321 aa10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 PKN1Q16512 942 aa10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 WLSQ5T9L3 541 aa10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 NUGGCQ68CJ6 796 aa10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 CAPN12Q6ZSI9 719 aa10.98□□□□□ -0.65
PDGFRB-207ENST00000520579 C14orf80Q86SX3 495 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms