RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 MSANTD4Q8NCY6 345 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 ZNF653Q96CK0 615 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 NACC1Q96RE7 527 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 A0A1B0GTH6 734 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 A6NNZ2 444 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 MYO1FO00160 1098 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 DKC1O60832 514 aaKnown RBP eCLIP12.73□□□□□ -0.37
SYNPO-204ENST00000519664 POLGP54098 1239 aaPredicted RBP12.73□□□□□ -0.37
SYNPO-204ENST00000519664 EPHB4P54760 987 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 DPYDQ12882 1025 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 TUBB8Q3ZCM7 444 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 CTAGE3PQ8IX95 158 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 ANKRD7Q92527 254 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 MTA3Q9BTC8 594 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 DHX36Q9H2U1 1008 aaKnown RBP12.73□□□□□ -0.37
SYNPO-204ENST00000519664 RGL1Q9NZL6 768 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 SEPT9Q9UHD8 586 aaPredicted RBP12.73□□□□□ -0.37
SYNPO-204ENST00000519664 DAAM1Q9Y4D1 1078 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 TECPR2O15040 1411 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 PGRMC1O00264 195 aaKnown RBP12.73□□□□□ -0.37
SYNPO-204ENST00000519664 FERP16591 822 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 ATP2A2P16615 1042 aaKnown RBP12.73□□□□□ -0.37
SYNPO-204ENST00000519664 SCYL2Q6P3W7 929 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 ADGRA1Q86SQ6 560 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 ZNF710Q8N1W2 664 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 PROCA1Q8NCQ7 364 aaPredicted RBP12.73□□□□□ -0.37
SYNPO-204ENST00000519664 LINC00116Q8NCU8 138 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 IWS1Q96ST2 819 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 NCAPGQ9BPX3 1015 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.73□□□□□ -0.37
SYNPO-204ENST00000519664 SMARCAL1Q9NZC9 954 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 ZNF148Q9UQR1 794 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 MRFAP1Q9Y605 127 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 ARL1P40616 181 aaPredicted RBP12.72□□□□□ -0.37
SYNPO-204ENST00000519664 MAGEA9P43362 315 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 KLK7P49862 253 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 RCAN1P53805 252 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 NNTQ13423 1086 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 NR1I3Q14994 352 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 STK38LQ9Y2H1 464 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 MEGF6O75095 1541 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 CASP7P55210 303 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 PEX3P56589 373 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 E2F4Q16254 413 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 ZNF746Q6NUN9 644 aaPredicted RBP12.72□□□□□ -0.37
SYNPO-204ENST00000519664 BZW2Q9Y6E2 419 aaKnown RBP12.72□□□□□ -0.37
SYNPO-204ENST00000519664 LOC102724159A0A0B4J2E5 919 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 GOLGA8KD6RF30 607 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 STX2P32856 288 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 ARHGAP25P42331 645 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 OSTNP61366 133 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 PWP2Q15269 919 aaKnown RBP12.72□□□□□ -0.37
SYNPO-204ENST00000519664 SF3B3Q15393 1217 aaKnown RBP12.72□□□□□ -0.37
SYNPO-204ENST00000519664 GNPTABQ3T906 1256 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 CYP4F22Q6NT55 531 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 RAD54LQ92698 747 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 TACO1Q9BSH4 297 aaKnown RBP12.72□□□□□ -0.37
SYNPO-204ENST00000519664 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.72□□□□□ -0.37
SYNPO-204ENST00000519664 NSFP46459 744 aaKnown RBP12.72□□□□□ -0.37
SYNPO-204ENST00000519664 ZKSCAN8Q15776 578 aaPredicted RBP12.72□□□□□ -0.37
SYNPO-204ENST00000519664 C6orf163Q5TEZ5 329 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 HHATQ5VTY9 493 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 MCTP2Q6DN12 878 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 CASC4Q6P4E1 433 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 FAM169AQ9Y6X4 670 aa12.72□□□□□ -0.37
SYNPO-204ENST00000519664 FGGP02679 453 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 GYPCP04921 128 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 CD44P16070 742 aaKnown RBP12.71□□□□□ -0.37
SYNPO-204ENST00000519664 GCLMP48507 274 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 MXI1P50539 228 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 PSMD2Q13200 908 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 PDCLQ13371 301 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 TAOK1Q7L7X3 1001 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 NCAPG2Q86XI2 1143 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 FOXP4Q8IVH2 680 aaPredicted RBP12.71□□□□□ -0.37
SYNPO-204ENST00000519664 RIN2Q8WYP3 895 aaPredicted RBP12.71□□□□□ -0.37
SYNPO-204ENST00000519664 NT5C1BQ96P26 610 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 TRIM6Q9C030 488 aaPredicted RBP12.71□□□□□ -0.37
SYNPO-204ENST00000519664 TBK1Q9UHD2 729 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 TRPC6Q9Y210 931 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 TTLL3Q9Y4R7 772 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 THAP12O43422 761 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 TRIM49P0CI25 452 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 TRIM49CP0CI26 452 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 LMNB1P20700 586 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 MAP3K9P80192 1104 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 ZNF211Q13398 564 aaPredicted RBP12.71□□□□□ -0.37
SYNPO-204ENST00000519664 TNFAIP1Q13829 316 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 SEPT14Q6ZU15 432 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 CACNA2D3Q8IZS8 1091 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 ZNF341Q9BYN7 854 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 STIM2Q9P246 746 aa12.71□□□□□ -0.37
SYNPO-204ENST00000519664 ALDH3A1P30838 453 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 GGCXP38435 758 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 ZNF131P52739 623 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 MTERF2Q49AM1 385 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 ADSSL1Q8N142 457 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 CCDC89Q8N998 374 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 PPP1R16BQ96T49 567 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 MMS19Q96T76 1030 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms