RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 POTEEQ6S8J3 1075 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 HDXQ7Z353 690 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 FRMD5Q7Z6J6 570 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 FAM160B2Q86V87 743 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 UBXN6Q9BZV1 441 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 ZMYND15Q9H091 742 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 EPC1Q9H2F5 836 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 TUFT1Q9NNX1 390 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 STK32BQ9NY57 414 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 YDJCA8MPS7 323 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 FAM86B1E9PN63 330 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 MSH4O15457 936 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 CALUO43852 315 aaPredicted RBP16.39■□□□□ 0.21
NUP54-217ENST00000514987 TBC1D12O60347 775 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 SEC31AO94979 1220 aaKnown RBP16.39■□□□□ 0.21
NUP54-217ENST00000514987 EYA4O95677 639 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 SERPING1P05155 500 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 FAM86B2P0C5J1 330 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 SPATA31C1P0DKV0 1188 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 EPS15P42566 896 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 ADAM9Q13443 819 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 SLC15A2Q16348 729 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 SFMBT2Q5VUG0 894 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 OGFOD1Q8N543 542 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 GLIS3Q8NEA6 775 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 ALS2CR12Q96Q35 445 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 PSMD1Q99460 953 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 P2RX7Q99572 595 aaKnown RBP16.39■□□□□ 0.21
NUP54-217ENST00000514987 FUT8Q9BYC5 575 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 LACRTQ9GZZ8 138 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 VAV3Q9UKW4 847 aa16.39■□□□□ 0.21
NUP54-217ENST00000514987 MRPL11Q9Y3B7 192 aaKnown RBP16.39■□□□□ 0.21
NUP54-217ENST00000514987 A0A1W2PRG0 241 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 TARSL2A2RTX5 802 aaKnown RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 RBAK-RBAKDNI3L0D1 243 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 PDXKO00764 312 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 ATP1A1P05023 1023 aaKnown RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 VIL1P09327 827 aaKnown RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 RPL13P26373 211 aaKnown RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 MAGEA1P43355 309 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 KCNMA1Q12791 1236 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 KNOP1Q1ED39 458 aaKnown RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 BMT2Q1RMZ1 405 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 EPM2AIP1Q7L775 607 aaPredicted RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 RNF10Q8N5U6 811 aaKnown RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 CCDC155Q8N6L0 562 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 ZNF70Q9UC06 446 aaPredicted RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 RABGAP1Q9Y3P9 1069 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 NPHP3-ACAD11A0A0J9YXS1 232 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 RCCD1A6NED2 376 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 GCOM1H8Y6P7 765 aaPredicted RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 MAP2K7O14733 419 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 OPLAHO14841 1288 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 EPHB6O15197 1021 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 TBCAO75347 108 aaKnown RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 EIF3JO75822 258 aaKnown RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 POLR2MP0CAP2 368 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 RXRBP28702 533 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 SNAP25P60880 206 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 JAG1P78504 1218 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 CYP27A1Q02318 531 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 ITIH3Q06033 890 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 CCDC70Q6NSX1 233 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 NELFCDQ8IXH7 590 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 MTMR14Q8NCE2 650 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 GMLQ99445 158 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 RANBP17Q9H2T7 1088 aaKnown RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 ZHX3Q9H4I2 956 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 METTL14Q9HCE5 456 aaKnown RBP16.38■□□□□ 0.21
NUP54-217ENST00000514987 TBC1D7Q9P0N9 293 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 ZBTB21Q9ULJ3 1066 aa16.38■□□□□ 0.21
NUP54-217ENST00000514987 IGLV3-22A0A075B6J6 115 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 ZNF263O14978 683 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 NKRFO15226 690 aaKnown RBP eCLIP16.37■□□□□ 0.21
NUP54-217ENST00000514987 SLC16A3O15427 465 aaKnown RBP16.37■□□□□ 0.21
NUP54-217ENST00000514987 USP14P54578 494 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 PABPC4Q13310 644 aaKnown RBP eCLIP16.37■□□□□ 0.21
NUP54-217ENST00000514987 SMC1AQ14683 1233 aaKnown RBP16.37■□□□□ 0.21
NUP54-217ENST00000514987 RRP1BQ14684 758 aaKnown RBP16.37■□□□□ 0.21
NUP54-217ENST00000514987 ASTE1Q2TB18 679 aaPredicted RBP16.37■□□□□ 0.21
NUP54-217ENST00000514987 SPDYE2Q495Y8 402 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 MAP9Q49MG5 647 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 BEND6Q5SZJ8 279 aaPredicted RBP16.37■□□□□ 0.21
NUP54-217ENST00000514987 FAM83BQ5T0W9 1011 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 RUBCNQ92622 972 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 EIF2AK1Q9BQI3 630 aaKnown RBP16.37■□□□□ 0.21
NUP54-217ENST00000514987 REEP2Q9BRK0 252 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 LSM14BQ9BX40 385 aaKnown RBP16.37■□□□□ 0.21
NUP54-217ENST00000514987 ACBD3Q9H3P7 528 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 OLFML3Q9NRN5 406 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 TSKSQ9UJT2 592 aa16.37■□□□□ 0.21
NUP54-217ENST00000514987 MACROD2A1Z1Q3 448 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 TCP10L2B9ZVM9 353 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 ENC1O14682 589 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 C21orf2O43822 256 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 RHOXF2BP0C7M4 288 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 TCP1P17987 556 aaKnown RBP16.36■□□□□ 0.21
NUP54-217ENST00000514987 NR2F2P24468 414 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 PPP2R5CQ13362 524 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 ZNF572Q7Z3I7 529 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms