RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 LRRIQ1Q96JM4 1722 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 EIF2AK2P19525 551 aaKnown RBP13.77□□□□□ -0.21
USP53-209ENST00000514665 SGO2Q562F6 1265 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 ZBTB8OSQ8IWT0 167 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 TBK1Q9UHD2 729 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 PCDHB4Q9Y5E5 795 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 TADA3O75528 432 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 FGGP02679 453 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 NR1D1P20393 614 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 MAP2K2P36507 400 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 PIK3CAP42336 1068 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 GRIN1Q05586 938 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 SFR1Q86XK3 245 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 TCP11Q8WWU5 503 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 OVOS2A0A0J9YW53 1432 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 OVOS2Q6IE36 1432 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 GOLGA8SH3BPF8 625 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 TROVE2P10155 538 aaKnown RBP eCLIP13.76□□□□□ -0.21
USP53-209ENST00000514665 FXR1P51114 621 aaKnown RBP eCLIP13.76□□□□□ -0.21
USP53-209ENST00000514665 PPP2R5CQ13362 524 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 FAM83BQ5T0W9 1011 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 LMNTD2Q8IXW0 634 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 DHX36Q9H2U1 1008 aaKnown RBP13.76□□□□□ -0.21
USP53-209ENST00000514665 KMT5AQ9NQR1 393 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 UBE2Q2LH0YL09 131 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 RNF8O76064 485 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 STK10O94804 968 aaKnown RBP13.76□□□□□ -0.21
USP53-209ENST00000514665 RCAN1P53805 252 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 HADHQ16836 314 aaKnown RBP13.76□□□□□ -0.21
USP53-209ENST00000514665 SMC1BQ8NDV3 1235 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 RUNDC3BQ96NL0 473 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 ACCSQ96QU6 501 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 NARFQ9UHQ1 456 aa13.76□□□□□ -0.21
USP53-209ENST00000514665 KCNH2Q12809 1159 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 SEPT2Q15019 361 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 RAB3IL1Q8TBN0 382 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 TBC1D31Q96DN5 1066 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 PBKQ96KB5 322 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 FMO2Q99518 471 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 TYW1Q9NV66 732 aaKnown RBP13.75□□□□□ -0.21
USP53-209ENST00000514665 BARHL2Q9NY43 387 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 IGBP1P78318 339 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 TTBK2Q6IQ55 1244 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 EMBQ6PCB8 327 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 HOOK2Q96ED9 719 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 PACSIN2Q9UNF0 486 aaPredicted RBP13.75□□□□□ -0.21
USP53-209ENST00000514665 POTEFA5A3E0 1075 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 POTEIP0CG38 1075 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 GBP1P32455 592 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 KRT81Q14533 505 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 POTEGQ6S5H5 508 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 POTEEQ6S8J3 1075 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 CCDC197Q8NCU1 140 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 MROH7-TTC4A0A0A0MT08 1334 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 PNPLA7Q6ZV29 1317 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 ZBTB5O15062 677 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 STAM2O75886 525 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 E2F5Q15329 346 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 TSNAXIP1Q2TAA8 658 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 SLC7A3Q8WY07 619 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 ATP6V0A1Q93050 837 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 MRFAP1Q9Y605 127 aa13.75□□□□□ -0.21
USP53-209ENST00000514665 HIP1RO75146 1068 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 TNNC2P02585 160 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 ATP1A1P05023 1023 aaKnown RBP13.74□□□□□ -0.21
USP53-209ENST00000514665 SNX16P57768 344 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 BPIFB4P59827 614 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 VSNL1P62760 191 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 GRM4Q14833 912 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 NKX1-1Q15270 411 aaPredicted RBP13.74□□□□□ -0.21
USP53-209ENST00000514665 SPATS2Q86XZ4 545 aaKnown RBP13.74□□□□□ -0.21
USP53-209ENST00000514665 ENGASEQ8NFI3 743 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 EPB41L4AQ9HCS5 686 aaPredicted RBP13.74□□□□□ -0.21
USP53-209ENST00000514665 SNX24Q9Y343 169 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 NCOA3Q9Y6Q9 1424 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 PVALEFA0A1B0GWK0 134 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 POLR2BP30876 1174 aaKnown RBP13.74□□□□□ -0.21
USP53-209ENST00000514665 GGCXP38435 758 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 TUBE1Q9UJT0 475 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 DNAJC12Q9UKB3 198 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 COL15A1P39059 1388 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 INO80B-WBP1J3KQ70 363 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 TXNDC9O14530 226 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 ECEL1O95672 775 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 YWHAGP61981 247 aaKnown RBP eCLIP13.74□□□□□ -0.21
USP53-209ENST00000514665 COASYQ13057 564 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 CCDC38Q502W7 563 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 ANKRD40Q6AI12 368 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 NCAPG2Q86XI2 1143 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 WHAMMQ8TF30 809 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 INO80BQ9C086 356 aaPredicted RBP13.74□□□□□ -0.21
USP53-209ENST00000514665 TDRD3Q9H7E2 651 aaKnown RBP13.74□□□□□ -0.21
USP53-209ENST00000514665 QTRT2Q9H974 415 aaKnown RBP13.74□□□□□ -0.21
USP53-209ENST00000514665 ANAPC4Q9UJX5 808 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 MAD1L1Q9Y6D9 718 aa13.74□□□□□ -0.21
USP53-209ENST00000514665 MORC2Q9Y6X9 1032 aaPredicted RBP13.74□□□□□ -0.21
USP53-209ENST00000514665 STAT3P40763 770 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 PEX3P56589 373 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 YWHAEP62258 255 aaKnown RBP13.73□□□□□ -0.21
USP53-209ENST00000514665 DYNLT1P63172 113 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms