RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 SNX27Q96L92 541 aa23.56■■□□□ 1.36
SQSTM1-215ENST00000514093 MAD2L2Q9UI95 211 aa23.56■■□□□ 1.36
SQSTM1-215ENST00000514093 CD207Q9UJ71 328 aa23.56■■□□□ 1.36
SQSTM1-215ENST00000514093 ADAM17P78536 824 aa23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 MRPS9P82933 396 aaKnown RBP23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 BTG3Q14201 252 aaPredicted RBP23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 SLC35G1Q2M3R5 365 aa23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 IFIT1BQ5T764 474 aaKnown RBP23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 CWC27Q6UX04 472 aaKnown RBP23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 RUFY4Q6ZNE9 571 aa23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 TICAM2Q86XR7 235 aa23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 PIGSQ96S52 555 aa23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 UBAC1Q9BSL1 405 aa23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 TECTAO75443 2155 aa23.55■■□□□ 1.36
SQSTM1-215ENST00000514093 ENPP3O14638 875 aa23.54■■□□□ 1.36
SQSTM1-215ENST00000514093 SEMA3FQ13275 785 aa23.54■■□□□ 1.36
SQSTM1-215ENST00000514093 ADAM15Q13444 863 aa23.54■■□□□ 1.36
SQSTM1-215ENST00000514093 CAMK1Q14012 370 aa23.54■■□□□ 1.36
SQSTM1-215ENST00000514093 METTL7BQ6UX53 244 aa23.54■■□□□ 1.36
SQSTM1-215ENST00000514093 CLP1Q92989 425 aaKnown RBP23.54■■□□□ 1.36
SQSTM1-215ENST00000514093 PBXIP1Q96AQ6 731 aa23.54■■□□□ 1.36
SQSTM1-215ENST00000514093 RC3H2Q9HBD1 1191 aaKnown RBP23.54■■□□□ 1.36
SQSTM1-215ENST00000514093 RWDD3Q9Y3V2 267 aa23.54■■□□□ 1.36
SQSTM1-215ENST00000514093 SPATA31C2B4DYI2 1134 aa23.53■■□□□ 1.36
SQSTM1-215ENST00000514093 NDUFV1P49821 464 aa23.53■■□□□ 1.36
SQSTM1-215ENST00000514093 NT5C2P49902 561 aa23.53■■□□□ 1.36
SQSTM1-215ENST00000514093 NEDD9Q14511 834 aa23.53■■□□□ 1.36
SQSTM1-215ENST00000514093 LPIN1Q14693 890 aa23.53■■□□□ 1.36
SQSTM1-215ENST00000514093 SAMD3Q8N6K7 520 aa23.53■■□□□ 1.36
SQSTM1-215ENST00000514093 LNPKQ9C0E8 428 aa23.53■■□□□ 1.36
SQSTM1-215ENST00000514093 ZNF215Q9UL58 517 aaPredicted RBP23.53■■□□□ 1.36
SQSTM1-215ENST00000514093 PLAGL2Q9UPG8 496 aa23.53■■□□□ 1.36
SQSTM1-215ENST00000514093 DOCK5Q9H7D0 1870 aa23.53■■□□□ 1.36
SQSTM1-215ENST00000514093 PALM3A6NDB9 673 aaPredicted RBP23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 TMEM221A6NGB7 291 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 M0R296 226 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 MMP1P03956 469 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 DNAJB1P25685 340 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 ICAM3P32942 547 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 GNPTABQ3T906 1256 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 TRIM67Q6ZTA4 783 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 ZNF689Q96CS4 500 aaPredicted RBP23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 MSLNLQ96KJ4 702 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 KRT23Q9C075 422 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 EHMT1Q9H9B1 1298 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 LAMA4Q16363 1823 aa23.52■■□□□ 1.36
SQSTM1-215ENST00000514093 IMMTQ16891 758 aaKnown RBP23.51■■□□□ 1.35
SQSTM1-215ENST00000514093 ADGRD2Q7Z7M1 963 aa23.51■■□□□ 1.35
SQSTM1-215ENST00000514093 INPP4AQ96PE3 977 aaPredicted RBP23.51■■□□□ 1.35
SQSTM1-215ENST00000514093 DGKIO75912 1065 aa23.5■■□□□ 1.35
SQSTM1-215ENST00000514093 MGAT3Q09327 533 aa23.5■■□□□ 1.35
SQSTM1-215ENST00000514093 SEC23AQ15436 765 aa23.5■■□□□ 1.35
SQSTM1-215ENST00000514093 CYB5R4Q7L1T6 521 aa23.5■■□□□ 1.35
SQSTM1-215ENST00000514093 BMP8AQ7Z5Y6 402 aa23.5■■□□□ 1.35
SQSTM1-215ENST00000514093 CLEC1BQ9P126 229 aa23.5■■□□□ 1.35
SQSTM1-215ENST00000514093 MRPL42Q9Y6G3 142 aaKnown RBP23.5■■□□□ 1.35
SQSTM1-215ENST00000514093 NRCAMQ92823 1304 aa23.5■■□□□ 1.35
SQSTM1-215ENST00000514093 USP34Q70CQ2 3546 aa23.49■■□□□ 1.35
SQSTM1-215ENST00000514093 FIBPO43427 364 aa23.49■■□□□ 1.35
SQSTM1-215ENST00000514093 PTPN5P54829 565 aa23.49■■□□□ 1.35
SQSTM1-215ENST00000514093 RRP1P56182 461 aaKnown RBP23.49■■□□□ 1.35
SQSTM1-215ENST00000514093 TCF15Q12870 199 aa23.49■■□□□ 1.35
SQSTM1-215ENST00000514093 RBM23Q86U06 439 aaKnown RBP23.49■■□□□ 1.35
SQSTM1-215ENST00000514093 PIBF1Q8WXW3 757 aa23.49■■□□□ 1.35
SQSTM1-215ENST00000514093 PLVAPQ9BX97 442 aa23.49■■□□□ 1.35
SQSTM1-215ENST00000514093 RIOX1Q9H6W3 641 aa23.49■■□□□ 1.35
SQSTM1-215ENST00000514093 CYTH3O43739 400 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 EYA4O95677 639 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 ITGB1P05556 798 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 ZXDAP98168 799 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 FBXO47Q5MNV8 452 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 SPPL3Q8TCT6 385 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 DNAJB3Q8WWF6 145 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 LINC01599Q8WXQ3 324 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 ZBTB10Q96DT7 871 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 DIAPH3Q9NSV4 1193 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 PCDHGC5Q9Y5F6 944 aa23.48■■□□□ 1.35
SQSTM1-215ENST00000514093 BAZ2BQ9UIF8 2168 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 STAM2O75886 525 aa23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 MARK3P27448 753 aa23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 NRIP1P48552 1158 aa23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 PAN2Q504Q3 1202 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 SUGP1Q8IWZ8 645 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 DSCC1Q9BVC3 393 aa23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 CNNM2Q9H8M5 875 aa23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 AGO3Q9H9G7 860 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 BARX2Q9UMQ3 279 aaPredicted RBP23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 CDY2AQ9Y6F7 541 aa23.47■■□□□ 1.35
SQSTM1-215ENST00000514093 PNMA6FA0A0J9YX94 578 aa23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 LOC730098B7Z3J9 87 aa23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 CD52P31358 61 aa23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 TCF7P36402 384 aaPredicted RBP23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 TRAF1Q13077 416 aa23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 PPFIA1Q13136 1202 aa23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 GRM4Q14833 912 aa23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 FRMPD4Q14CM0 1322 aa23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 B4GALNT3Q6L9W6 998 aa23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 TAF2Q6P1X5 1199 aa23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 RSPH3Q86UC2 560 aa23.46■■□□□ 1.35
SQSTM1-215ENST00000514093 RTN4RL1Q86UN2 441 aaPredicted RBP23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms