RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 KCNC1P48547 511 aa5.47□□□□□ -1.53
NUP54-212ENST00000513248 LSAMPQ13449 338 aa5.47□□□□□ -1.53
NUP54-212ENST00000513248 SLC9A5Q14940 896 aa5.47□□□□□ -1.53
NUP54-212ENST00000513248 TKFCQ3LXA3 575 aa5.47□□□□□ -1.53
NUP54-212ENST00000513248 FNDC3BQ53EP0 1204 aaKnown RBP5.47□□□□□ -1.53
NUP54-212ENST00000513248 C16orf86Q6ZW13 317 aa5.47□□□□□ -1.53
NUP54-212ENST00000513248 BDH2Q9BUT1 245 aa5.47□□□□□ -1.53
NUP54-212ENST00000513248 PDGFDQ9GZP0 370 aaPredicted RBP5.47□□□□□ -1.53
NUP54-212ENST00000513248 MYRFQ9Y2G1 1151 aa5.47□□□□□ -1.53
NUP54-212ENST00000513248 SIT1Q9Y3P8 196 aa5.47□□□□□ -1.53
NUP54-212ENST00000513248 TRAF6Q9Y4K3 522 aa5.47□□□□□ -1.53
NUP54-212ENST00000513248 KDM6BO15054 1643 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 PLEKHD1A6NEE1 506 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 ZBTB7AO95365 584 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 ASGR2P07307 311 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 SLURP1P55000 103 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 RTP5Q14D33 572 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 MROH9Q5TGP6 573 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 CEP68Q76N32 757 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 HOMER1Q86YM7 354 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 IFNL3Q8IZI9 196 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 APPBP2Q92624 585 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 TRMT2BQ96GJ1 504 aaKnown RBP5.46□□□□□ -1.54
NUP54-212ENST00000513248 TMEM169Q96HH4 297 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 RNF38Q9H0F5 515 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 BCAS3Q9H6U6 928 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 FANCLQ9NW38 375 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 PCDHA2Q9Y5H9 948 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 KDM5BQ9UGL1 1544 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 FHOD3Q2V2M9 1422 aa5.46□□□□□ -1.54
NUP54-212ENST00000513248 TEX14Q8IWB6 1497 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 WDR7Q9Y4E6 1490 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 ZCCHC11Q5TAX3 1644 aaKnown RBP5.45□□□□□ -1.54
NUP54-212ENST00000513248 EPRSP07814 1512 aaKnown RBP5.45□□□□□ -1.54
NUP54-212ENST00000513248 AQP7O14520 342 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 EFCAB14O75071 495 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 PMLP29590 882 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 LIMS1P48059 325 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 SLC6A11P48066 632 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 KIZQ2M2Z5 673 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 VWA3BQ502W6 1294 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 EMC4Q5J8M3 183 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 SDE2Q6IQ49 451 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 HHIPL2Q6UWX4 724 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 PCDH19Q8TAB3 1148 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 SEC14L1Q92503 715 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 CHAMP1Q96JM3 812 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 AP5M1Q9H0R1 490 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 PPARGC1AQ9UBK2 798 aaKnown RBP5.45□□□□□ -1.54
NUP54-212ENST00000513248 FAN1Q9Y2M0 1017 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 COA3Q9Y2R0 106 aaPredicted RBP5.45□□□□□ -1.54
NUP54-212ENST00000513248 CD109Q6YHK3 1445 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 TSPOAP1O95153 1857 aa5.45□□□□□ -1.54
NUP54-212ENST00000513248 KIF13AQ9H1H9 1805 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 PRICKLE3O43900 615 aaPredicted RBP5.44□□□□□ -1.54
NUP54-212ENST00000513248 TADA3O75528 432 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 ABCA8O94911 1581 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 RAPGEF3O95398 923 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 ASMTLO95671 621 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 CKMP06732 381 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 NCAM1P13591 858 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 ATF2P15336 505 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 HSD3B2P26439 372 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 TCEA2Q15560 299 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 DALRD3Q5D0E6 543 aaKnown RBP5.44□□□□□ -1.54
NUP54-212ENST00000513248 EGFLAMQ63HQ2 1017 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 FGD2Q7Z6J4 655 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 CLDND1Q9NY35 253 aa5.44□□□□□ -1.54
NUP54-212ENST00000513248 TMA7Q9Y2S6 64 aaKnown RBP5.44□□□□□ -1.54
NUP54-212ENST00000513248 GLI2P10070 1586 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 TCRBV16S1A1N1A0A5B0 115 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 SGSM2O43147 1006 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 CDC45O75419 566 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 DNAJC8O75937 253 aaPredicted RBP5.43□□□□□ -1.54
NUP54-212ENST00000513248 CRTAMO95727 393 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 MC3RP41968 323 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 HTRA3P83110 453 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 PABPC4Q13310 644 aaKnown RBP eCLIP5.43□□□□□ -1.54
NUP54-212ENST00000513248 ABHD17CQ6PCB6 329 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 LIPIQ6XZB0 460 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 BRAPQ7Z569 592 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 B3GNT8Q7Z7M8 397 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 FNIP1Q8TF40 1166 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.43□□□□□ -1.54
NUP54-212ENST00000513248 IPO9Q96P70 1041 aaKnown RBP5.43□□□□□ -1.54
NUP54-212ENST00000513248 FEZ1Q99689 392 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 SFMBT1Q9UHJ3 866 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 PALD1Q9ULE6 856 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 PCDHA8Q9Y5H6 950 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 CD2APQ9Y5K6 639 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 KIF21BO75037 1637 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 ATP10BO94823 1461 aa5.43□□□□□ -1.54
NUP54-212ENST00000513248 RAPGEF6Q8TEU7 1601 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 SH3D21A4FU49 640 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 K7ESM1 405 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 SOD2P04179 222 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 SDSP20132 328 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 GRK2P25098 689 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 GRK3P35626 688 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 FOXO4P98177 505 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms