RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ADCY1Q08828 1119 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 SESTD1Q86VW0 696 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 SMYD1Q8NB12 490 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 FAM13CQ8NE31 585 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 HAUS1Q96CS2 278 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 ZNF333Q96JL9 665 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 TRIM47Q96LD4 638 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 RMDN2Q96LZ7 410 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 TMEM98Q9Y2Y6 226 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 MYH7BA7E2Y1 1941 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 F8VZ95 297 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 MAGEB3O15480 346 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 CYP1A1P04798 512 aaPredicted RBP13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 CCDC166P0CW27 439 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 TFCP2Q12800 502 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 BTG3Q14201 252 aaPredicted RBP13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 WASHC4Q2M389 1173 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 IRF2BP1Q8IU81 584 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 MAP7D3Q8IWC1 876 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 FAM133AQ8N9E0 248 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 SYMPKQ92797 1274 aaKnown RBP13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 NMD3Q96D46 503 aaKnown RBP13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 FAM192AQ9GZU8 254 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 CABP5Q9NP86 173 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 ARHGEF38Q9NXL2 777 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 SRPRBQ9Y5M8 271 aaKnown RBP13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 A6NJR5 290 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 E7ENQ6 273 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 WFS1O76024 890 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 TARSP26639 723 aaKnown RBP13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 SERPINB3P29508 390 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 SNX30Q5VWJ9 437 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 ZNF449Q6P9G9 518 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 TRIM50Q86XT4 487 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 PCDH18Q9HCL0 1135 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 ARHGAP20Q9P2F6 1191 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 HAO1Q9UJM8 370 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 SH3GLB1Q9Y371 365 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 ANKRD26Q9UPS8 1709 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 PCDH11XQ9BZA7 1347 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 MLH1P40692 756 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 PRCPP42785 496 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 DNM2P50570 870 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 GFPT1Q06210 699 aaPredicted RBP13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 CUL1Q13616 776 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 KBTBD3Q8NAB2 608 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 DTX3LQ8TDB6 740 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 ZNF653Q96CK0 615 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 TLCD1Q96CP7 247 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 NR1H4Q96RI1 486 aaPredicted RBP13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 TIPINQ9BVW5 301 aa13.09□□□□□ -0.31
LIMCH1-213ENST00000511496 KCNK3O14649 394 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 LSAMPQ13449 338 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 MAP7Q14244 749 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 DUS1LQ6P1R4 473 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 CYP4X1Q8N118 509 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 ATP11CQ8NB49 1132 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 TAF4BQ92750 862 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 SIKE1Q9BRV8 207 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 RXFP1Q9HBX9 757 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 FAM207AQ9NSI2 230 aaPredicted RBP13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 EXOC1Q9NV70 894 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 PDP2Q9P2J9 529 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 RNF14Q9UBS8 474 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 DENND2AQ9ULE3 1009 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 ITGA2BP08514 1039 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 GNAT2P19087 354 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 VHLP40337 213 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 CFAP157Q5JU67 520 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 TMC3Q7Z5M5 1100 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 SCUBE1Q8IWY4 988 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 ANKRD42Q8N9B4 389 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 ARPC5LQ9BPX5 153 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 STOML1Q9UBI4 398 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 AMACRQ9UHK6 382 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 ARL2BPQ9Y2Y0 163 aa13.08□□□□□ -0.32
LIMCH1-213ENST00000511496 TET3O43151 1660 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 A0A1W2PQC6 194 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 EPHB2P29323 1055 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 ANTXR2P58335 489 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 AIMP1Q12904 312 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 DIXDC1Q155Q3 683 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 TDRD12Q587J7 1177 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 MPP4Q96JB8 637 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 TUBGCP2Q9BSJ2 902 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 OXCT2Q9BYC2 517 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 ADAM7Q9H2U9 754 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 KLHL14Q9P2G3 628 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 H7C1D1 291 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 UNC5CO95185 931 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 ZFXP17010 805 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 RASA1P20936 1047 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 MMP13P45452 471 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 PMS1P54277 932 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 USP38Q8NB14 1042 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 GDAP1Q8TB36 358 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 ZNF507Q8TCN5 953 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 LENG1Q96BZ8 264 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 ATP8A2Q9NTI2 1148 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms