RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 TANC1Q9C0D5 1861 aa20.52■□□□□ 0.88
TPM3-220ENST00000509601 ARP10275 920 aa20.52■□□□□ 0.88
TPM3-220ENST00000509601 SCG2P13521 617 aa20.52■□□□□ 0.88
TPM3-220ENST00000509601 PDIA3P30101 505 aaKnown RBP20.52■□□□□ 0.88
TPM3-220ENST00000509601 TCF7P36402 384 aaPredicted RBP20.52■□□□□ 0.88
TPM3-220ENST00000509601 RUFY3Q7L099 469 aa20.52■□□□□ 0.88
TPM3-220ENST00000509601 EHMT1Q9H9B1 1298 aa20.52■□□□□ 0.88
TPM3-220ENST00000509601 KCNH7Q9NS40 1196 aa20.52■□□□□ 0.88
TPM3-220ENST00000509601 MEIS1O00470 390 aa20.51■□□□□ 0.87
TPM3-220ENST00000509601 BAIAP3O94812 1187 aa20.51■□□□□ 0.87
TPM3-220ENST00000509601 THPOP40225 353 aa20.51■□□□□ 0.87
TPM3-220ENST00000509601 TOB2Q14106 344 aaPredicted RBP20.51■□□□□ 0.87
TPM3-220ENST00000509601 ADGRE1Q14246 886 aa20.51■□□□□ 0.87
TPM3-220ENST00000509601 CNKSR3Q6P9H4 555 aa20.51■□□□□ 0.87
TPM3-220ENST00000509601 PHKBQ93100 1093 aa20.51■□□□□ 0.87
TPM3-220ENST00000509601 SLC9A7Q96T83 725 aa20.51■□□□□ 0.87
TPM3-220ENST00000509601 GLT8D2Q9H1C3 349 aa20.51■□□□□ 0.87
TPM3-220ENST00000509601 SPTBN5Q9NRC6 3674 aaKnown RBP20.5■□□□□ 0.87
TPM3-220ENST00000509601 RSPH10B2B2RC85 870 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 RSPH10BP0C881 870 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 SREBF1P36956 1147 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 WDR5P61964 334 aaKnown RBP20.5■□□□□ 0.87
TPM3-220ENST00000509601 AP3B2Q13367 1082 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 CEP55Q53EZ4 464 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 JAKMIP3Q5VZ66 844 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 ERICH6BQ5W0A0 696 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 HERC6Q8IVU3 1022 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 CRYGNQ8WXF5 182 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 PCYT2Q99447 389 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 OSBPL7Q9BZF2 842 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 ZMYND12Q9H0C1 365 aa20.5■□□□□ 0.87
TPM3-220ENST00000509601 ZNF215Q9UL58 517 aaPredicted RBP20.5■□□□□ 0.87
TPM3-220ENST00000509601 ESYT2A0FGR8 921 aa20.49■□□□□ 0.87
TPM3-220ENST00000509601 PPFIA3O75145 1194 aa20.49■□□□□ 0.87
TPM3-220ENST00000509601 CCT2P78371 535 aaKnown RBP20.49■□□□□ 0.87
TPM3-220ENST00000509601 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.49■□□□□ 0.87
TPM3-220ENST00000509601 TM6SF1Q9BZW5 370 aa20.49■□□□□ 0.87
TPM3-220ENST00000509601 ABHD14A-ACY1A0A1B0GW23 586 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 LGR5O75473 907 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 ARHGEF15O94989 841 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 GNAT1P11488 350 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 IFNAR1P17181 557 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 ITGB3BPQ13352 177 aaPredicted RBP20.48■□□□□ 0.87
TPM3-220ENST00000509601 TMCO2Q7Z6W1 182 aaPredicted RBP20.48■□□□□ 0.87
TPM3-220ENST00000509601 USP38Q8NB14 1042 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 DBF4BQ8NFT6 615 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 LMBR1Q8WVP7 490 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 NCOA5Q9HCD5 579 aaKnown RBP20.48■□□□□ 0.87
TPM3-220ENST00000509601 AGO4Q9HCK5 861 aaKnown RBP20.48■□□□□ 0.87
TPM3-220ENST00000509601 SLC9A2Q9UBY0 812 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 NFASCO94856 1347 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 NRCAMQ92823 1304 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 VCANP13611 3396 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 KAT6AQ92794 2004 aa20.48■□□□□ 0.87
TPM3-220ENST00000509601 DLL1O00548 723 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 CA3P07451 260 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 CYP3A4P08684 503 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 DEFB103AP81534 67 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 ARHGAP4P98171 946 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 MKRN4PQ13434 485 aaPredicted RBP20.47■□□□□ 0.87
TPM3-220ENST00000509601 IKBKEQ14164 716 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 PPP2R2DQ66LE6 453 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 GAS2L1Q99501 681 aaPredicted RBP20.47■□□□□ 0.87
TPM3-220ENST00000509601 LARP6Q9BRS8 491 aaKnown RBP20.47■□□□□ 0.87
TPM3-220ENST00000509601 RNF26Q9BY78 433 aaPredicted RBP20.47■□□□□ 0.87
TPM3-220ENST00000509601 SMARCAD1Q9H4L7 1026 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 C6orf50Q9HD87 102 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 JPH1Q9HDC5 661 aaPredicted RBP20.47■□□□□ 0.87
TPM3-220ENST00000509601 ERAP1Q9NZ08 941 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 CYP46A1Q9Y6A2 500 aa20.47■□□□□ 0.87
TPM3-220ENST00000509601 FAM86B1E9PN63 330 aa20.46■□□□□ 0.87
TPM3-220ENST00000509601 ATG7O95352 703 aa20.46■□□□□ 0.87
TPM3-220ENST00000509601 FAM86B2P0C5J1 330 aa20.46■□□□□ 0.87
TPM3-220ENST00000509601 KCNJ6P48051 423 aa20.46■□□□□ 0.87
TPM3-220ENST00000509601 PLEKHG4Q58EX7 1191 aa20.46■□□□□ 0.87
TPM3-220ENST00000509601 FAM26DQ5JW98 314 aa20.46■□□□□ 0.87
TPM3-220ENST00000509601 MARCH8Q5T0T0 291 aa20.46■□□□□ 0.87
TPM3-220ENST00000509601 GLG1Q92896 1179 aa20.46■□□□□ 0.87
TPM3-220ENST00000509601 SLC26A6Q9BXS9 759 aa20.46■□□□□ 0.87
TPM3-220ENST00000509601 PTPRSQ13332 1948 aa20.46■□□□□ 0.87
TPM3-220ENST00000509601 IGLV3-22A0A075B6J6 115 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 KIF28PB7ZC32 967 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 DHX15O43143 795 aaKnown RBP20.45■□□□□ 0.86
TPM3-220ENST00000509601 EDIL3O43854 480 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 CAND2O75155 1236 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 MARK3P27448 753 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 ZNF76P36508 570 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 ACTR2P61160 394 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 TAP1Q03518 808 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.45■□□□□ 0.864e-6■□□□□ 9.7
TPM3-220ENST00000509601 RUFY4Q6ZNE9 571 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 NIPA1Q7RTP0 329 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 RPAINQ86UA6 219 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 CCDC12Q8WUD4 166 aaPredicted RBP20.45■□□□□ 0.86
TPM3-220ENST00000509601 ZNF274Q96GC6 653 aaPredicted RBP20.45■□□□□ 0.86
TPM3-220ENST00000509601 SDF4Q9BRK5 362 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 UPF3BQ9BZI7 483 aaKnown RBP20.45■□□□□ 0.86
TPM3-220ENST00000509601 EMSYQ7Z589 1322 aa20.45■□□□□ 0.86
TPM3-220ENST00000509601 MBLAC1A4D2B0 266 aaPredicted RBP20.44■□□□□ 0.86
TPM3-220ENST00000509601 RFXAPO00287 272 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms