RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 C11orf84Q9BUA3 381 aaPredicted RBP24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 RB1P06400 928 aa24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 CSPP1Q1MSJ5 1256 aa24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 FAM26DQ5JW98 314 aa24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 PTCRAQ6ISU1 281 aaPredicted RBP24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 FAM43BQ6ZT52 329 aaPredicted RBP24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 TEX2Q8IWB9 1127 aa24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 GLG1Q92896 1179 aa24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 ZFP91Q96JP5 570 aaPredicted RBP24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 LMAN2LQ9H0V9 348 aa24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 SMARCAD1Q9H4L7 1026 aa24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 NSUN3Q9H649 340 aaKnown RBP24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 PSTPIP2Q9H939 334 aa24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 RNF216Q9NWF9 866 aaPredicted RBP24.16■■□□□ 1.46
SQSTM1-210ENST00000506042 RALGAPA2Q2PPJ7 1873 aa24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 SGSM2O43147 1006 aa24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 GPR37L1O60883 481 aa24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 GSPT1P15170 499 aaKnown RBP24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 TCF7P36402 384 aaPredicted RBP24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 PPFIA1Q13136 1202 aa24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 EP400NLQ6ZTU2 488 aa24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 RPAINQ86UA6 219 aa24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 GJD3Q8N144 294 aa24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 LMBR1Q8WVP7 490 aa24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 SEPT1Q8WYJ6 367 aa24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 GPKOWQ92917 476 aaPredicted RBP eCLIP24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 LRFN3Q9BTN0 628 aa24.15■■□□□ 1.46
SQSTM1-210ENST00000506042 PTH1RQ03431 593 aa24.14■■□□□ 1.45
SQSTM1-210ENST00000506042 MTMR1Q13613 665 aa24.14■■□□□ 1.45
SQSTM1-210ENST00000506042 TCTN1Q2MV58 587 aa24.14■■□□□ 1.45
SQSTM1-210ENST00000506042 SPRED2Q7Z698 418 aa24.14■■□□□ 1.45
SQSTM1-210ENST00000506042 IGDCC4Q8TDY8 1250 aa24.14■■□□□ 1.45
SQSTM1-210ENST00000506042 MAP4K1Q92918 833 aa24.14■■□□□ 1.45
SQSTM1-210ENST00000506042 AZI2Q9H6S1 392 aa24.14■■□□□ 1.45
SQSTM1-210ENST00000506042 TUBE1Q9UJT0 475 aa24.14■■□□□ 1.45
SQSTM1-210ENST00000506042 RRN3P2A6NIE6 340 aa24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 PRC1O43663 620 aa24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 CTNNB1P35222 781 aa24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 HIC1Q14526 733 aa24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 IER5Q5VY09 327 aa24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 USP17L6PQ6QN14 398 aa24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 PABPC5Q96DU9 382 aaKnown RBP24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 UPF3BQ9BZI7 483 aaKnown RBP24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 EPHX3Q9H6B9 360 aa24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 PRKAG3Q9UGI9 489 aa24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 SLC12A7Q9Y666 1083 aa24.13■■□□□ 1.45
SQSTM1-210ENST00000506042 MKRN4PQ13434 485 aaPredicted RBP24.12■■□□□ 1.45
SQSTM1-210ENST00000506042 TRIM50Q86XT4 487 aa24.12■■□□□ 1.45
SQSTM1-210ENST00000506042 FAM178BQ8IXR5 827 aa24.12■■□□□ 1.45
SQSTM1-210ENST00000506042 MB21D2Q8IYB1 491 aaPredicted RBP24.12■■□□□ 1.45
SQSTM1-210ENST00000506042 POP1Q99575 1024 aaKnown RBP24.12■■□□□ 1.45
SQSTM1-210ENST00000506042 FTHL17Q9BXU8 183 aa24.12■■□□□ 1.45
SQSTM1-210ENST00000506042 IL25Q9H293 177 aa24.12■■□□□ 1.45
SQSTM1-210ENST00000506042 RBM8AQ9Y5S9 174 aaKnown RBP24.12■■□□□ 1.45
SQSTM1-210ENST00000506042 BAZ2BQ9UIF8 2168 aaKnown RBP24.11■■□□□ 1.45
SQSTM1-210ENST00000506042 PI4K2BG5E9Z4 385 aa24.11■■□□□ 1.45
SQSTM1-210ENST00000506042 RNF20Q5VTR2 975 aa24.11■■□□□ 1.45
SQSTM1-210ENST00000506042 SDF4Q9BRK5 362 aa24.11■■□□□ 1.45
SQSTM1-210ENST00000506042 LY9Q9HBG7 655 aa24.11■■□□□ 1.45
SQSTM1-210ENST00000506042 NLRC5Q86WI3 1866 aa24.11■■□□□ 1.45
SQSTM1-210ENST00000506042 ADGRA3Q8IWK6 1321 aa24.1■■□□□ 1.45
SQSTM1-210ENST00000506042 MEIS2O14770 477 aa24.1■■□□□ 1.45
SQSTM1-210ENST00000506042 LIFRP42702 1097 aa24.1■■□□□ 1.45
SQSTM1-210ENST00000506042 GRIK4Q16099 956 aa24.1■■□□□ 1.45
SQSTM1-210ENST00000506042 SQORQ9Y6N5 450 aa24.1■■□□□ 1.45
SQSTM1-210ENST00000506042 BDP1A6H8Y1 2624 aa24.1■■□□□ 1.45
SQSTM1-210ENST00000506042 GRXCR2A6NFK2 248 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 STAG3L1P0CL83 205 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 GHRP10912 638 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 ADAM17P78536 824 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 SEMA3FQ13275 785 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 BTG3Q14201 252 aaPredicted RBP24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 SLC35G1Q2M3R5 365 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 ODR4Q5SWX8 454 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 TSHZ1Q6ZSZ6 1077 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 PLVAPQ9BX97 442 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 GLT8D2Q9H1C3 349 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 SENP2Q9HC62 589 aa24.09■■□□□ 1.45
SQSTM1-210ENST00000506042 LOC101059915A0A1B0GWI6 518 aaPredicted RBP24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 PRR33A8MZF0 331 aa24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 C5orf67F2Z3F1 127 aa24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 PDE4AP27815 886 aa24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 GADD45GIP1Q8TAE8 222 aaPredicted RBP24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 NEK9Q8TD19 979 aa24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 JPH1Q9HDC5 661 aaPredicted RBP24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 CLDND1Q9NY35 253 aa24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 RAPGEFL1Q9UHV5 662 aa24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 TRPC6Q9Y210 931 aa24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 DOCK5Q9H7D0 1870 aa24.08■■□□□ 1.45
SQSTM1-210ENST00000506042 FOSP01100 380 aaPredicted RBP24.07■■□□□ 1.44
SQSTM1-210ENST00000506042 BMPR1AP36894 532 aa24.07■■□□□ 1.44
SQSTM1-210ENST00000506042 ANTXR2P58335 489 aa24.07■■□□□ 1.44
SQSTM1-210ENST00000506042 NAALADL2Q58DX5 795 aa24.07■■□□□ 1.44
SQSTM1-210ENST00000506042 TCEAL5Q5H9L2 206 aa24.07■■□□□ 1.44
SQSTM1-210ENST00000506042 HEATR3Q7Z4Q2 680 aa24.07■■□□□ 1.44
SQSTM1-210ENST00000506042 MYL10Q9BUA6 226 aa24.07■■□□□ 1.44
SQSTM1-210ENST00000506042 RBM28Q9NW13 759 aaKnown RBP24.07■■□□□ 1.44
SQSTM1-210ENST00000506042 MUC3AQ02505 3323 aa24.07■■□□□ 1.44
SQSTM1-210ENST00000506042 hCG_1984214I3L0E3 225 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms