RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 POMGNT1Q8WZA1 660 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 TRIM11Q96F44 468 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 WDR24Q96S15 920 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L15C9J2P7 530 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L13C9JLJ4 530 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L11C9JVI0 530 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L18D6R9N7 530 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L22D6RA61 530 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L17D6RBQ6 530 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L19D6RCP7 530 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L20D6RJB6 530 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 TADA3O75528 432 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 AKR1B1P15121 316 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 BAG6P46379 1132 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L24Q0WX57 530 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 CTTNQ14247 550 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 ZNF772Q68DY9 489 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L6PQ6QN14 398 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 USP49Q70CQ1 688 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 WHAMMQ8TF30 809 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 CCDC127Q96BQ5 260 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 RIOK1Q9BRS2 568 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 EDEM3Q9BZQ6 932 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 JCADQ9P266 1359 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 ECE2O60344 883 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 RASA1P20936 1047 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 NAA30Q147X3 362 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 ANKRD40Q6AI12 368 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 EMBQ6PCB8 327 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 RTKN2Q8IZC4 609 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 RNF10Q8N5U6 811 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 TRIM7Q9C029 511 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 PASKQ96RG2 1323 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 AP5Z1O43299 807 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 DLATP10515 647 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 FCER1AP12319 257 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 CCND2P30279 289 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 ALDH3A1P30838 453 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 POLGP54098 1239 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 QRICH1Q2TAL8 776 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 RABEP2Q9H5N1 569 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 TYW1Q9NV66 732 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 DAGLAQ9Y4D2 1042 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 HSPA6P17066 643 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 MAN1A1P33908 653 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 PRELPP51888 382 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 SNAP25P60880 206 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 MTF1Q14872 753 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 SLC10A5Q5PT55 438 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 PRR5LQ6MZQ0 368 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 SFR1Q86XK3 245 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 ZBTB8OSQ8IWT0 167 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 ZMYND12Q9H0C1 365 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 RAB20Q9NX57 234 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 POTEB3A0JP26 581 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 POTECB2RU33 542 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 SRGNP10124 158 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 PPP2R5AQ15172 486 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 POTEBQ6S5H4 581 aa11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 INTS8Q75QN2 995 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-205ENST00000503057 TNS2Q63HR2 1409 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 NR3C1P04150 777 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 P4HA1P13674 534 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 IRX3P78415 501 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 GRIN1Q05586 938 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 KNOP1Q1ED39 458 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 BBOF1Q8ND07 529 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 GJD4Q96KN9 370 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 KMT5AQ9NQR1 393 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 DIS3Q9Y2L1 958 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 AFF2P51816 1311 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 PPP1R3GB7ZBB8 358 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 TOB1P50616 345 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 PTK2Q05397 1052 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 SEC23AQ15436 765 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 ALKBH5Q6P6C2 394 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 GIMAP8Q8ND71 665 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 BCAS4Q8TDM0 211 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 CALR3Q96L12 384 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 STIM2Q9P246 746 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 MAD2L2Q9UI95 211 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 TOPAZ1Q8N9V7 1692 aa11.71□□□□□ -0.53
LIMCH1-205ENST00000503057 HNRNPDLO14979 420 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 PIK3CAP42336 1068 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 NSFP46459 744 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 ATP1A2P50993 1020 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 PPP4CP60510 307 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 ZBTB16Q05516 673 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 ZNF543Q08ER8 600 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 PPP1R2P3Q6NXS1 205 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 CDHR1Q96JP9 859 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 PPANQ9NQ55 473 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 ADAMTS1Q9UHI8 967 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 CACNB3P54284 484 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 MAP3K9P80192 1104 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 FYB2Q5VWT5 728 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 HINFPQ9BQA5 517 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 NRBP2Q9NSY0 501 aa11.71□□□□□ -0.54
LIMCH1-205ENST00000503057 FEM1BQ9UK73 627 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms