RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 TRIB2Q92519 343 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 SHISA4Q96DD7 197 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 NRDE2Q9H7Z3 1164 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 PPCSQ9HAB8 311 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 MLXIPQ9HAP2 919 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.65□□□□□ -1.51
USP54-216ENST00000498143 PTPRQQ9UMZ3 2332 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 BECN2A8MW95 431 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 PI4K2BG5E9Z4 385 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 GALR2O43603 387 aaPredicted RBP5.65□□□□□ -1.51
USP54-216ENST00000498143 PRC1O43663 620 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 ATP2B1P20020 1258 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 SP4Q02446 784 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 DMPKQ09013 629 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 KCNA10Q16322 511 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 KLHL40Q2TBA0 621 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 CERKLQ49MI3 558 aaPredicted RBP5.65□□□□□ -1.51
USP54-216ENST00000498143 ZNF394Q53GI3 561 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 HHIPL2Q6UWX4 724 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 SYNE3Q6ZMZ3 975 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 MAMSTRQ6ZN01 415 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 FILIP1Q7Z7B0 1213 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 CCDC50Q8IVM0 306 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 CKAP2LQ8IYA6 745 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 RASEFQ8IZ41 740 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 EMC3Q9P0I2 261 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 SAP30BPQ9UHR5 308 aaKnown RBP5.65□□□□□ -1.51
USP54-216ENST00000498143 SORCS3Q9UPU3 1222 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 PRELID1Q9Y255 219 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 DIS3Q9Y2L1 958 aaKnown RBP5.65□□□□□ -1.51
USP54-216ENST00000498143 MEGF6O75095 1541 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 COQ9O75208 318 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 ZFYP08048 801 aaPredicted RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 RPSAP08865 295 aaKnown RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 CTSHP09668 335 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 VDRP11473 427 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 NEK2P51955 445 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 SMAD4Q13485 552 aaKnown RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 CCDC84Q86UT8 332 aaPredicted RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 CEP57L1Q8IYX8 460 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 SIX5Q8N196 739 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 LRRN4CLQ8ND94 238 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 JAKMIP2Q96AA8 810 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 CDCA7LQ96GN5 454 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 POLR3CQ9BUI4 534 aaPredicted RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 PI4KBQ9UBF8 816 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 DIAPH2O60879 1101 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 CYP2C9P11712 490 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 ALAS1P13196 640 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 GFAPP14136 432 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 NRIP1P48552 1158 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 CTSWP56202 376 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 POLR2FP61218 127 aaKnown RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 TRIM32Q13049 653 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 LEXMQ3ZCV2 418 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 LMBRD2Q68DH5 695 aaPredicted RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 PHLDB2Q86SQ0 1253 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 SNX32Q86XE0 403 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 EFCAB3Q8N7B9 438 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 PHOSPHO2Q8TCD6 241 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 SNRNP27Q8WVK2 155 aaKnown RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 PTPN18Q99952 460 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 KATNAL1Q9BW62 490 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 TRIM7Q9C029 511 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 NDRG2Q9UN36 371 aaKnown RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 MROH7-TTC4A0A0A0MT08 1334 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 COL22A1Q8NFW1 1626 aaPredicted RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 ARHGAP6O43182 974 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 MYZAPP0CAP1 466 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 TUBA1BP68363 451 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 DAB2P98082 770 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 EIF2B5Q13144 721 aaKnown RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 RCN1Q15293 331 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 TCEAL5Q5H9L2 206 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 FAAH2Q6GMR7 532 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 ASTLQ6HA08 431 aaPredicted RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 TUBA1AQ71U36 451 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 CCDC186Q7Z3E2 898 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 TMCO5AQ8N6Q1 288 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 ZNF397Q8NF99 534 aaPredicted RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 TMC2Q8TDI7 906 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 GTF3C6Q969F1 213 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 LRIG1Q96JA1 1093 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 CFAP57Q96MR6 1250 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 TTC14Q96N46 770 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 RANBP17Q9H2T7 1088 aaKnown RBP5.64□□□□□ -1.51
USP54-216ENST00000498143 CAPN10Q9HC96 672 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 NAV3Q8IVL0 2385 aa5.64□□□□□ -1.51
USP54-216ENST00000498143 J3QKU1 62 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 ZBTB16Q05516 673 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 SPEM2Q0P670 501 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 PARP9Q8IXQ6 854 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 RGL4Q8IZJ4 473 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 KIF18AQ8NI77 898 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 KIFC2Q96AC6 838 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 RTFDC1Q9BY42 306 aaPredicted RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 TRIM5Q9C035 493 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 DHX36Q9H2U1 1008 aaKnown RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 CCDC86Q9H6F5 360 aaKnown RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 PAK6Q9NQU5 681 aaPredicted RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms