RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 SMARCAD1Q9H4L7 1026 aa14.57□□□□□ -0.08
PTPRF-214ENST00000496043 PKD2L1Q9P0L9 805 aa14.57□□□□□ -0.08
PTPRF-214ENST00000496043 NRCAMQ92823 1304 aa14.57□□□□□ -0.08
PTPRF-214ENST00000496043 SCN5AQ14524 2016 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 PRPF3O43395 683 aaKnown RBP14.56□□□□□ -0.08
PTPRF-214ENST00000496043 ZNF76P36508 570 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 AKAP17AQ02040 695 aaKnown RBP14.56□□□□□ -0.08
PTPRF-214ENST00000496043 AP3B2Q13367 1082 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 MBTPS1Q14703 1052 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 PFKFB3Q16875 520 aaPredicted RBP14.56□□□□□ -0.08
PTPRF-214ENST00000496043 CEP55Q53EZ4 464 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 MCTP2Q6DN12 878 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 DBF4BQ8NFT6 615 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 GLG1Q92896 1179 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 TNPO1Q92973 898 aaKnown RBP14.56□□□□□ -0.08
PTPRF-214ENST00000496043 ANO3Q9BYT9 981 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 KCNH7Q9NS40 1196 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 ERAP1Q9NZ08 941 aa14.56□□□□□ -0.08
PTPRF-214ENST00000496043 SCG2P13521 617 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 CLK2P49760 499 aaKnown RBP14.55□□□□□ -0.08
PTPRF-214ENST00000496043 ADAM17P78536 824 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 CCDC85BQ15834 202 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-214ENST00000496043 TCTN1Q2MV58 587 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 CYP2W1Q8TAV3 490 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 CCDC12Q8WUD4 166 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-214ENST00000496043 PGBD1Q96JS3 809 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 RAD9AQ99638 391 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 SDF4Q9BRK5 362 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 AGXT2Q9BYV1 514 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 C6orf50Q9HD87 102 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 JPH1Q9HDC5 661 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-214ENST00000496043 TMEM260Q9NX78 707 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 SLC9A2Q9UBY0 812 aa14.55□□□□□ -0.08
PTPRF-214ENST00000496043 RRN3P2A6NIE6 340 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 MEIS1O00470 390 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 ARP10275 920 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 SREBF1P36956 1147 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 DEFB103AP81534 67 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 TAP1Q03518 808 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 PLEKHG4Q58EX7 1191 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 FAM26DQ5JW98 314 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 JAKMIP3Q5VZ66 844 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 RUFY3Q7L099 469 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 RSPH3Q86UC2 560 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 USP38Q8NB14 1042 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 LMBR1Q8WVP7 490 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 SEPT8Q92599 483 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 COL25A1Q9BXS0 654 aaPredicted RBP14.54□□□□□ -0.08
PTPRF-214ENST00000496043 AZI2Q9H6S1 392 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 CERS4Q9HA82 394 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 NFASCO94856 1347 aa14.54□□□□□ -0.08
PTPRF-214ENST00000496043 MYO9BQ13459 2157 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 TET1Q8NFU7 2136 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 ESYT2A0FGR8 921 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 RFXAPO00287 272 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 GTPBP6O43824 516 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-214ENST00000496043 GJB5O95377 273 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 AMHP03971 560 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 CTSHP09668 335 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 POU3F3P20264 500 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-214ENST00000496043 MARK3P27448 753 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 GNA11P29992 359 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 PDIA3P30101 505 aaKnown RBP14.53□□□□□ -0.08
PTPRF-214ENST00000496043 EVCP57679 992 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 PPFIA1Q13136 1202 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 GRIK4Q16099 956 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 PKN1Q16512 942 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 TAF2Q6P1X5 1199 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 NIPA1Q7RTP0 329 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 TMCO2Q7Z6W1 182 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-214ENST00000496043 RPAINQ86UA6 219 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 ARNTL2Q8WYA1 636 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 SYMPKQ92797 1274 aaKnown RBP14.53□□□□□ -0.08
PTPRF-214ENST00000496043 ZMYND12Q9H0C1 365 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 TSPYL2Q9H2G4 693 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-214ENST00000496043 ZSWIM6Q9HCJ5 1215 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 AGO4Q9HCK5 861 aaKnown RBP14.53□□□□□ -0.08
PTPRF-214ENST00000496043 CYP46A1Q9Y6A2 500 aa14.53□□□□□ -0.08
PTPRF-214ENST00000496043 CYP3A4P08684 503 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 STAT5BP51692 787 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 ACTR2P61160 394 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 CCT2P78371 535 aaKnown RBP14.52□□□□□ -0.09
PTPRF-214ENST00000496043 FAM117BQ6P1L5 589 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.52□□□□□ -0.097e-8■□□□□ 9.6
PTPRF-214ENST00000496043 PLPPR4Q7Z2D5 763 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 PLA2G4DQ86XP0 818 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 BICD2Q8TD16 824 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 PHKBQ93100 1093 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 PCYT2Q99447 389 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 RNF26Q9BY78 433 aaPredicted RBP14.52□□□□□ -0.09
PTPRF-214ENST00000496043 PPP4R2Q9NY27 417 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 INSL6Q9Y581 213 aa14.52□□□□□ -0.09
PTPRF-214ENST00000496043 ATG7O95352 703 aa14.51□□□□□ -0.09
PTPRF-214ENST00000496043 INSRRP14616 1297 aa14.51□□□□□ -0.09
PTPRF-214ENST00000496043 IFNAR1P17181 557 aa14.51□□□□□ -0.09
PTPRF-214ENST00000496043 NTRK3Q16288 839 aa14.51□□□□□ -0.09
PTPRF-214ENST00000496043 RUFY4Q6ZNE9 571 aa14.51□□□□□ -0.09
PTPRF-214ENST00000496043 ATXN2LQ8WWM7 1075 aaKnown RBP14.51□□□□□ -0.09
PTPRF-214ENST00000496043 APBB2Q92870 758 aa14.51□□□□□ -0.09
PTPRF-214ENST00000496043 SLC26A6Q9BXS9 759 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms