RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 PSMD10O75832 226 aa19.3■□□□□ 0.68
HDAC6-235ENST00000495515 BMP15O95972 392 aa19.3■□□□□ 0.68
HDAC6-235ENST00000495515 JAK3P52333 1124 aa19.3■□□□□ 0.68
HDAC6-235ENST00000495515 RDM1Q8NG50 284 aa19.3■□□□□ 0.68
HDAC6-235ENST00000495515 HAS1Q92839 578 aa19.3■□□□□ 0.68
HDAC6-235ENST00000495515 HTATIP2Q9BUP3 242 aa19.3■□□□□ 0.68
HDAC6-235ENST00000495515 CEP131Q9UPN4 1083 aa19.3■□□□□ 0.68
HDAC6-235ENST00000495515 SAMM50Q9Y512 469 aa19.3■□□□□ 0.68
HDAC6-235ENST00000495515 PCDHB6Q9Y5E3 794 aa19.3■□□□□ 0.68
HDAC6-235ENST00000495515 PCDHA10Q9Y5I2 948 aa19.3■□□□□ 0.68
HDAC6-235ENST00000495515 A0A0U1RQG5 324 aaPredicted RBP19.29■□□□□ 0.68
HDAC6-235ENST00000495515 GSTTP1A0A1W2PQM5 241 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 WNT7AO00755 349 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 CCNE2O96020 404 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 LGALS2P05162 132 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 PSAPP07602 524 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 OR52Z1P0C646 297 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 UTP14CQ5TAP6 766 aaKnown RBP19.29■□□□□ 0.68
HDAC6-235ENST00000495515 FAM160B1Q5W0V3 765 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 GLG1Q92896 1179 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 MTMR9Q96QG7 549 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 SMARCAD1Q9H4L7 1026 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.29■□□□□ 0.68
HDAC6-235ENST00000495515 PCDHA12Q9UN75 941 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 FRMPD3Q5JV73 1810 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 CENPFP49454 3210 aa19.29■□□□□ 0.68
HDAC6-235ENST00000495515 BACH1O14867 736 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 CHMP2AO43633 222 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 ATG7O95352 703 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 F2P00734 622 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 SUPT20HL2P0C7V6 817 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 ZNF286BP0CG31 522 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 TXKP42681 527 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 PPP2R5CQ13362 524 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 NBR1Q14596 966 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 TMEM266Q2M3C6 531 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 MIER3Q7Z3K6 550 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 TNPO1Q92973 898 aaKnown RBP19.28■□□□□ 0.68
HDAC6-235ENST00000495515 GJA10Q969M2 543 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 UNC45AQ9H3U1 944 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 TTC12Q9H892 705 aaPredicted RBP19.28■□□□□ 0.68
HDAC6-235ENST00000495515 DISC1Q9NRI5 854 aa19.28■□□□□ 0.68
HDAC6-235ENST00000495515 EMSYQ7Z589 1322 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 H3BRB1 525 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 F13A1P00488 732 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 SLC26A2P50443 739 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 PTGDRQ13258 359 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 ITGA7Q13683 1181 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 C1orf53Q5VUE5 145 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 ABHD15Q6UXT9 468 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 SLC39A5Q6ZMH5 540 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 ZNF396Q96N95 335 aaPredicted RBP19.27■□□□□ 0.68
HDAC6-235ENST00000495515 C16orf70Q9BSU1 422 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 RAB34Q9BZG1 259 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 TMEM60Q9H2L4 133 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 TUT1Q9H6E5 874 aaKnown RBP19.27■□□□□ 0.68
HDAC6-235ENST00000495515 TSHZ2Q9NRE2 1034 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 ERAP1Q9NZ08 941 aa19.27■□□□□ 0.68
HDAC6-235ENST00000495515 RBM19Q9Y4C8 960 aaKnown RBP19.27■□□□□ 0.68
HDAC6-235ENST00000495515 MROH7Q68CQ1 1323 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 LGR5O75473 907 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 PRPHP41219 470 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 PSEN2P49810 448 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 STAT5BP51692 787 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 ATN1P54259 1190 aaPredicted RBP19.26■□□□□ 0.67
HDAC6-235ENST00000495515 CHMP4BP1P59074 171 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 NUCB2P80303 420 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 MFSD10Q14728 455 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 FOXD4L5Q5VV16 416 aaPredicted RBP19.26■□□□□ 0.67
HDAC6-235ENST00000495515 B3GNT9Q6UX72 402 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 PLPPR4Q7Z2D5 763 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 FOXD4L4Q8WXT5 416 aaPredicted RBP19.26■□□□□ 0.67
HDAC6-235ENST00000495515 KAT2BQ92831 832 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 ZNF302Q9NR11 478 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 VAV3Q9UKW4 847 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 TELO2Q9Y4R8 837 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 ATP6V1DQ9Y5K8 247 aa19.26■□□□□ 0.67
HDAC6-235ENST00000495515 IGKV6D-21A0A0A0MT36 114 aa19.25■□□□□ 0.67
HDAC6-235ENST00000495515 ARVCFO00192 962 aa19.25■□□□□ 0.67
HDAC6-235ENST00000495515 BRD1O95696 1058 aa19.25■□□□□ 0.67
HDAC6-235ENST00000495515 PSMC6P62333 389 aa19.25■□□□□ 0.67
HDAC6-235ENST00000495515 PTPN11Q06124 597 aaPredicted RBP19.25■□□□□ 0.67
HDAC6-235ENST00000495515 SNX17Q15036 470 aa19.25■□□□□ 0.67
HDAC6-235ENST00000495515 KIAA0753Q2KHM9 967 aa19.25■□□□□ 0.67
HDAC6-235ENST00000495515 PRPF38BQ5VTL8 546 aaKnown RBP19.25■□□□□ 0.67
HDAC6-235ENST00000495515 SWSAP1Q6NVH7 229 aa19.25■□□□□ 0.67
HDAC6-235ENST00000495515 NFRKBQ6P4R8 1299 aa19.25■□□□□ 0.67
HDAC6-235ENST00000495515 C7orf31Q8N865 590 aa19.25■□□□□ 0.67
HDAC6-235ENST00000495515 AFAP1L1Q8TED9 768 aa19.25■□□□□ 0.67
HDAC6-235ENST00000495515 HAS3O00219 553 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 DKC1O60832 514 aaKnown RBP eCLIP19.24■□□□□ 0.67
HDAC6-235ENST00000495515 ATP2C1P98194 919 aaPredicted RBP19.24■□□□□ 0.67
HDAC6-235ENST00000495515 PKP1Q13835 747 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 EPHA7Q15375 998 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 SF3A1Q15459 793 aaKnown RBP19.24■□□□□ 0.67
HDAC6-235ENST00000495515 NBPF20Q3BBV1 942 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 FAM47CQ5HY64 1035 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 ARL6IP4Q66PJ3 421 aaKnown RBP19.24■□□□□ 0.67
HDAC6-235ENST00000495515 ATL3Q6DD88 541 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 NCAPH2Q6IBW4 605 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms