RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 NOL4O94818 638 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 SPATA31C1P0DKV0 1188 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 CASP5P51878 434 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 NAP1L1P55209 391 aaKnown RBP12.37□□□□□ -0.43
CHMP3-209ENST00000494623 ARID5AQ03989 594 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 SPIRE1Q08AE8 756 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 GIT2Q14161 759 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 ENOX2Q16206 610 aaKnown RBP12.37□□□□□ -0.43
CHMP3-209ENST00000494623 Q4G0T1 1027 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 FAM83BQ5T0W9 1011 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 FOXR2Q6PJQ5 311 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 MOXD1Q6UVY6 613 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 TRIM58Q8NG06 486 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 PSMB7Q99436 277 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 HINFPQ9BQA5 517 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 JRKLQ9Y4A0 524 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 GREB1LQ9C091 1923 aaPredicted RBP12.37□□□□□ -0.43
CHMP3-209ENST00000494623 TCP10L2B9ZVM9 353 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 CETN3O15182 167 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 MSH4O15457 936 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 LCA5LO95447 670 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 GNA14O95837 355 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 TUBBP07437 444 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 CASP8Q14790 479 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 SFMBT2Q5VUG0 894 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 STYK1Q6J9G0 422 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 WDR93Q6P2C0 686 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 SLC30A10Q6XR72 485 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 LENG9Q96B70 501 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 EDEM3Q9BZQ6 932 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 PRR12Q9ULL5 1215 aa12.37□□□□□ -0.43
CHMP3-209ENST00000494623 NPM3O75607 178 aaKnown RBP12.36□□□□□ -0.43
CHMP3-209ENST00000494623 FOSP01100 380 aaPredicted RBP12.36□□□□□ -0.43
CHMP3-209ENST00000494623 RPA1P27694 616 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 SREBF1P36956 1147 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 EPS15P42566 896 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 ECE1P42892 770 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 C2orf54Q08AI8 447 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 GPS2Q13227 327 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 HGSNATQ68CP4 663 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 SAMD1Q6SPF0 538 aaPredicted RBP12.36□□□□□ -0.43
CHMP3-209ENST00000494623 TRIM59Q8IWR1 403 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 BCAS3Q9H6U6 928 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.36□□□□□ -0.43
CHMP3-209ENST00000494623 CEP72Q9P209 647 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 SALL4Q9UJQ4 1053 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 SNX12Q9UMY4 172 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 NRXN2Q9P2S2 1712 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 OPLAHO14841 1288 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 TBX3O15119 743 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 BUB1O43683 1085 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 N4BP1O75113 896 aaKnown RBP12.36□□□□□ -0.43
CHMP3-209ENST00000494623 PRPF6O94906 941 aaKnown RBP12.36□□□□□ -0.43
CHMP3-209ENST00000494623 NR2F2P24468 414 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 CXCR5P32302 372 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 SLC9C1Q4G0N8 1177 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 SFR1Q86XK3 245 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 SYT2Q8N9I0 419 aaPredicted RBP12.36□□□□□ -0.43
CHMP3-209ENST00000494623 COG1Q8WTW3 980 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 TBC1D5Q92609 795 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 REEP2Q9BRK0 252 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.36□□□□□ -0.43
CHMP3-209ENST00000494623 RGL1Q9NZL6 768 aa12.36□□□□□ -0.43
CHMP3-209ENST00000494623 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.36□□□□□ -0.43
CHMP3-209ENST00000494623 PITPNM2Q9BZ72 1349 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 COL11A2P13942 1736 aaPredicted RBP12.35□□□□□ -0.43
CHMP3-209ENST00000494623 ARFGEF1Q9Y6D6 1849 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 CLRN2A0PK11 232 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 FRMD3A2A2Y4 597 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 NCK2O43639 380 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 TLR2O60603 784 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 ENTPD3O75355 529 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 CYP2C19P33261 490 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 MATR3P43243 847 aaKnown RBP eCLIP12.35□□□□□ -0.43
CHMP3-209ENST00000494623 FAM193AP78312 1265 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 KCNH2Q12809 1159 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 RAPGEF1Q13905 1077 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 ASTE1Q2TB18 679 aaPredicted RBP12.35□□□□□ -0.43
CHMP3-209ENST00000494623 CC2D2BQ6DHV5 1058 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 MCTP2Q6DN12 878 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 RPGRIP1Q96KN7 1286 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 FAM20AQ96MK3 541 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 BHMT2Q9H2M3 363 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 SCN9AQ15858 1988 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 LRRIQ3A6PVS8 624 aaPredicted RBP12.35□□□□□ -0.43
CHMP3-209ENST00000494623 SFI1A8K8P3 1242 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 RSPH10B2B2RC85 870 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 EML1O00423 815 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 PPIP5K2O43314 1243 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 SLC26A4O43511 780 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 EIF3JO75822 258 aaKnown RBP12.35□□□□□ -0.43
CHMP3-209ENST00000494623 CFBP00751 764 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 RSPH10BP0C881 870 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 MYBP10242 640 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 NFRKBQ6P4R8 1299 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 CCDC174Q6PII3 467 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 CREG2Q8IUH2 290 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 ACER1Q8TDN7 264 aa12.35□□□□□ -0.43
CHMP3-209ENST00000494623 ZFP91Q96JP5 570 aaPredicted RBP12.35□□□□□ -0.43
CHMP3-209ENST00000494623 GDAP1L1Q96MZ0 367 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms