RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 EHHADHQ08426 723 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 SPA17Q15506 151 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 MAN2A1Q16706 1144 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 IFIH1Q9BYX4 1025 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 CCDC40Q4G0X9 1142 aa18.24■□□□□ 0.51
CCDC88B-210ENST00000494566 PODNQ7Z5L7 613 aa18.24■□□□□ 0.51
CCDC88B-210ENST00000494566 MYO1AQ9UBC5 1043 aa18.24■□□□□ 0.51
CCDC88B-210ENST00000494566 NDUFB10O96000 172 aa18.24■□□□□ 0.51
CCDC88B-210ENST00000494566 KRT18P05783 430 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-210ENST00000494566 CASP5P51878 434 aa18.24■□□□□ 0.51
CCDC88B-210ENST00000494566 PABPC4Q13310 644 aaKnown RBP eCLIP18.24■□□□□ 0.51
CCDC88B-210ENST00000494566 TRADDQ15628 312 aa18.24■□□□□ 0.51
CCDC88B-210ENST00000494566 CENPHQ9H3R5 247 aa18.24■□□□□ 0.51
CCDC88B-210ENST00000494566 QSER1Q2KHR3 1735 aa18.24■□□□□ 0.51
CCDC88B-210ENST00000494566 PSMD14O00487 310 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 LIG3P49916 1009 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 GUCY2FP51841 1108 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 CCDC181Q5TID7 509 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 CCDC17Q96LX7 622 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 FAM107BQ9H098 131 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 A0A1W2PRG0 241 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 GOLGA6BA6NDN3 693 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 FAM86B1E9PN63 330 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 AGPSO00116 658 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 FAM86B2P0C5J1 330 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 IBSPP21815 317 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 ARHGAP4P98171 946 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 KCNMA1Q12791 1236 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 ABCB5Q2M3G0 1257 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 PACS2Q86VP3 889 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 SLX4Q8IY92 1834 aa18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 PRMT6Q96LA8 375 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-210ENST00000494566 CLRN2A0PK11 232 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 ZEB2O60315 1214 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 ECE1P42892 770 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 KIF11P52732 1056 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 UBXN2AP68543 259 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 RETREG2Q8NC44 543 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 TSG101Q99816 390 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 MYO3BQ8WXR4 1341 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 GREB1LQ9C091 1923 aaPredicted RBP18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 GOLGA6CA6NDK9 693 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 FTCDO95954 541 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 GOLGA6DP0CG33 693 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 CYP11B2P19099 503 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 PPP1R2P41236 205 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 ARSHQ5FYA8 562 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 CACNA2D4Q7Z3S7 1137 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 TSEN2Q8NCE0 465 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 GOLGA6AQ9NYA3 693 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 PLAGL2Q9UPG8 496 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 SCAF8Q9UPN6 1271 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 TCP10L2B9ZVM9 353 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 LRRC63Q05C16 580 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 SEMA3FQ13275 785 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 ZYXQ15942 572 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 COBLL1Q53SF7 1204 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 CATSPER3Q86XQ3 398 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 MICALL1Q8N3F8 863 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 TBC1D5Q92609 795 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 ARL8AQ96BM9 186 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 ACBD3Q9H3P7 528 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 KCNMB3Q9NPA1 279 aa18.22■□□□□ 0.51
CCDC88B-210ENST00000494566 STRIP1Q5VSL9 837 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 SCFD1Q8WVM8 642 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 IKZF4Q9H2S9 585 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 PCDHA13Q9Y5I0 950 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 COL4A3BPQ9Y5P4 624 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 KRT14P02533 472 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 VAV2P52735 878 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 ZCWPW2Q504Y3 356 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 CCNI2Q6ZMN8 369 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 CCDC170Q8IYT3 715 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 BAP1Q92560 729 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 CSRNP1Q96S65 589 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 BMP2KQ9NSY1 1161 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 NYAP2Q9P242 653 aa18.21■□□□□ 0.51
CCDC88B-210ENST00000494566 RSPH10B2B2RC85 870 aa18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 RSPH10BP0C881 870 aa18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 GCFC2P16383 781 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 KIAA1755Q5JYT7 1200 aa18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 FBXO11Q86XK2 927 aa18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 CDAN1Q8IWY9 1227 aa18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 DHX37Q8IY37 1157 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 DHX36Q9H2U1 1008 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 H0YIN7 160 aa18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 PRPF6O94906 941 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 WDR93Q6P2C0 686 aa18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 DCAF4Q8WV16 495 aa18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 LSM14BQ9BX40 385 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 PCDHA2Q9Y5H9 948 aa18.2■□□□□ 0.5
CCDC88B-210ENST00000494566 A0A1W2PQJ5 194 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 SFI1A8K8P3 1242 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 OPLAHO14841 1288 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 POLR2FP61218 127 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 FKBP3Q00688 224 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 MKL1Q969V6 931 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 AMNQ9BXJ7 453 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 NT5C3AQ9H0P0 336 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms