RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 GEMIN8Q9NWZ8 242 aaKnown RBP17.77■□□□□ 0.43
CCDC88B-209ENST00000494080 FBXO2Q9UK22 296 aaPredicted RBP17.77■□□□□ 0.43
CCDC88B-209ENST00000494080 SHPRHQ149N8 1683 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 ECE2O60344 883 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 FTCDO95954 541 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 PRCPP42785 496 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 ARHGAP27Q6ZUM4 889 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 TRIM6Q9C030 488 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 ZBTB5O15062 677 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 MYL1P05976 194 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 ATP5DP30049 168 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 MAN2A1Q16706 1144 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 BEND6Q5SZJ8 279 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 MCF2L2Q86YR7 1114 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 MXD3Q9BW11 206 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 BHMT2Q9H2M3 363 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 IKBKGQ9Y6K9 419 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 ATP1A1P05023 1023 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 FMR1Q06787 632 aaKnown RBP eCLIP17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 RNF10Q8N5U6 811 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 RAB17Q9H0T7 212 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 EMILIN3Q9NT22 766 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 NOVA2Q9UNW9 492 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 CSADQ9Y600 493 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 SASH3O75995 380 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 TRPC3Q13507 836 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 SUFUQ9UMX1 484 aa17.76■□□□□ 0.43
CCDC88B-209ENST00000494080 DLATP10515 647 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 RBBP5Q15291 538 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 GNPTABQ3T906 1256 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 BARGINQ6ZT62 677 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 OTUD6AQ7L8S5 288 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 CROCCP2Q86T23 111 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 VTI1AQ96AJ9 217 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 MMS19Q96T76 1030 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 AS3MTQ9HBK9 375 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 EIF4A3P38919 411 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 FAM133BQ5BKY9 247 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 KRT26Q7Z3Y9 468 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 PPM1KQ8N3J5 372 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 RETREG2Q8NC44 543 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 DDX12PQ92771 950 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 MRRFQ96E11 262 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 METTL14Q9HCE5 456 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 INTS9Q9NV88 658 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 DAGLAQ9Y4D2 1042 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 PLEKHG2Q9H7P9 1386 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 SFI1A8K8P3 1242 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 TDP2O95551 362 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 CHRNA5P30532 468 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 SLC27A3Q5K4L6 730 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 HOMER3Q9NSC5 361 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 IVNS1ABPQ9Y6Y0 642 aa17.75■□□□□ 0.43
CCDC88B-209ENST00000494080 ESYT3A0FGR9 886 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 HNRNPLLQ8WVV9 542 aaKnown RBP17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 VCXQ9H320 206 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 RIC8AQ9NPQ8 531 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 CD2APQ9Y5K6 639 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 FER1L4A9Z1Z3 1794 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 IRAK1P51617 712 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 ZNF131P52739 623 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 LRRC31Q6UY01 552 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 MB21D1Q8N884 522 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 USTQ9Y2C2 406 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 F5H6K3 240 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 ATP2C1P98194 919 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 GRIN1Q05586 938 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 KLRC3Q07444 240 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 TTBK2Q6IQ55 1244 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 SP8Q8IXZ3 490 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 IQCGQ9H095 443 aaKnown RBP17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 CD19P15391 556 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 CTTNQ14247 550 aaKnown RBP17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 TMED8Q6PL24 325 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 TXNRD3Q86VQ6 643 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 NDST4Q9H3R1 872 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 L1RE1Q9UN81 338 aa17.74■□□□□ 0.43
CCDC88B-209ENST00000494080 TTC26A0AVF1 554 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 HMGB1P1B2RPK0 211 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 STX2P32856 288 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 NT5C2P49902 561 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 TBC1D1Q86TI0 1168 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 CCDC105Q8IYK2 499 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 SH2D3CQ8N5H7 860 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 DEPTORQ8TB45 409 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 SMC6Q96SB8 1091 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 VIPAS39Q9H9C1 493 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 ASIC3Q9UHC3 531 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 TUBE1Q9UJT0 475 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 ST3GAL1Q11201 340 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 QRICH1Q2TAL8 776 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 EAPPQ56P03 285 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 PIGOQ8TEQ8 1089 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 KLHL14Q9P2G3 628 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 ATP8A1Q9Y2Q0 1164 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 MEFVO15553 781 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 PRPF6O94906 941 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 H2AFZP0C0S5 128 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms